New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1041849 =	63 (1.280)	3 (0.060)	3/238	NT	5.0%	coding (329/684 nt)	colR	two‑component system response regulator
	?	NC_002947	1041877 =	54 (1.160)					coding (357/684 nt)	colR	two‑component system response regulator

TGAGGCCGACCGGGTTGAGCTTCAACAGGCGACCCTGGCGGGTAACCTCCAGGGTATCGAGGTCGTAGCTCAGGTCAGCCACCTGCAGGGTGCGCCGCCCACCGCCCTGGGCACGGCGCAGCACCGCTTCGATGC‑GCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1041989‑1041849 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgTGCCCAGGGCGGTGGGCGGCGCACCCTGCAGGTGGCTGACCTGAGCTACGACCTCGATACCCTGGAGGTTACCCGCCAGGGTCGCCTGTTGAAGCTCAACCCGGTCGGCCTCAAGCTGCTGGCGGTACTGATGCAGAAAA  >  NC_002947/1041877‑1042016                                                                                                                                                                                                                                                                                            TGAGGCCGACCGGGTTGAGCTTCAACAGGCGACCCTGGCGGGTAACCTCCAGGGTATCGAGGTCGTAGCTCAGGTCAGCCACCTGCAGGGTGCGCCGCCCACCGCCCTGGGCACGGCGC‑GCATCGAAGCGGTGCTGCGCCGTGCCCAGGG                                                                                                                                     <  1:1037478/150‑1              GTTGAGCTTCAACAGGCGACCCTGGCGGGTAACCTCCAGGGTATCGAGGTCGTAGCTCAGGTCAGCCACCTGCAGGGTGCGCCGCCCACCGCCCTGGGCACGGCGCAGCACCGCTTCGATGC‑GC                                                                                                                                                  >  1:548206/1‑124              GTTGAGCTTCAACAGGCGACCCTGGCGGGTAACCTCCAGGGTATCGAGGTCGTAGCTCAGGTCAGCCACCTGCAGGGTGCGCCGCCCACCGCCCTGGGCACGGCGCAGCACCGCTTCGATGC‑GC                                                                                                                                                  <  2:548206/124‑1                                                                                                                   GGCGCAGCACCGCTTCGATGC‑GCGCCGTGCCCAGGGCGGTGGGCGGCGCACCCTGCAGGTGGCTGACCTGAGCTACGACCTCGATACCCTGGAGG                                                                          >  1:293981/1‑95                                                                                                                   GGCGCAGCACCGCTTCGATGC‑GCGCCGTGCCCAGGGCGGTGGGCGGCGCACCCTGCAGGTGGCTGACCTGAGCTACGACCTCGATACCCTGGAGG                                                                          <  2:293981/95‑1                                                                                                                                    ATGC‑GCGCCGTGCCCAGGGCGGTGGGCGGCGCACCCTGCAGGTGGCTGACCTGAGCTACGACCTCGATACCCTGGAGGTTACCCGCCAGGGTCGCCTGTTGAAGCTCAACCCGGTCGGCCTCAAGCTGCTGGCGGTACTGATGCAGAAAA  <  2:1037478/150‑1                                                                                                                                                                                                                                                                                            TGAGGCCGACCGGGTTGAGCTTCAACAGGCGACCCTGGCGGGTAACCTCCAGGGTATCGAGGTCGTAGCTCAGGTCAGCCACCTGCAGGGTGCGCCGCCCACCGCCCTGGGCACGGCGCAGCACCGCTTCGATGC‑GCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1041989‑1041849 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgTGCCCAGGGCGGTGGGCGGCGCACCCTGCAGGTGGCTGACCTGAGCTACGACCTCGATACCCTGGAGGTTACCCGCCAGGGTCGCCTGTTGAAGCTCAACCCGGTCGGCCTCAAGCTGCTGGCGGTACTGATGCAGAAAA  >  NC_002947/1041877‑1042016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.