New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1041849 = | 63 (1.280) | 3 (0.060) | 3/238 | NT | 5.0% | coding (329/684 nt) | colR | two‑component system response regulator |
? | NC_002947 | 1041877 = | 54 (1.160) | coding (357/684 nt) | colR | two‑component system response regulator |
TGAGGCCGACCGGGTTGAGCTTCAACAGGCGACCCTGGCGGGTAACCTCCAGGGTATCGAGGTCGTAGCTCAGGTCAGCCACCTGCAGGGTGCGCCGCCCACCGCCCTGGGCACGGCGCAGCACCGCTTCGATGC‑GCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1041989‑1041849 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgTGCCCAGGGCGGTGGGCGGCGCACCCTGCAGGTGGCTGACCTGAGCTACGACCTCGATACCCTGGAGGTTACCCGCCAGGGTCGCCTGTTGAAGCTCAACCCGGTCGGCCTCAAGCTGCTGGCGGTACTGATGCAGAAAA > NC_002947/1041877‑1042016 TGAGGCCGACCGGGTTGAGCTTCAACAGGCGACCCTGGCGGGTAACCTCCAGGGTATCGAGGTCGTAGCTCAGGTCAGCCACCTGCAGGGTGCGCCGCCCACCGCCCTGGGCACGGCGC‑GCATCGAAGCGGTGCTGCGCCGTGCCCAGGG < 1:1037478/150‑1 GTTGAGCTTCAACAGGCGACCCTGGCGGGTAACCTCCAGGGTATCGAGGTCGTAGCTCAGGTCAGCCACCTGCAGGGTGCGCCGCCCACCGCCCTGGGCACGGCGCAGCACCGCTTCGATGC‑GC > 1:548206/1‑124 GTTGAGCTTCAACAGGCGACCCTGGCGGGTAACCTCCAGGGTATCGAGGTCGTAGCTCAGGTCAGCCACCTGCAGGGTGCGCCGCCCACCGCCCTGGGCACGGCGCAGCACCGCTTCGATGC‑GC < 2:548206/124‑1 GGCGCAGCACCGCTTCGATGC‑GCGCCGTGCCCAGGGCGGTGGGCGGCGCACCCTGCAGGTGGCTGACCTGAGCTACGACCTCGATACCCTGGAGG > 1:293981/1‑95 GGCGCAGCACCGCTTCGATGC‑GCGCCGTGCCCAGGGCGGTGGGCGGCGCACCCTGCAGGTGGCTGACCTGAGCTACGACCTCGATACCCTGGAGG < 2:293981/95‑1 ATGC‑GCGCCGTGCCCAGGGCGGTGGGCGGCGCACCCTGCAGGTGGCTGACCTGAGCTACGACCTCGATACCCTGGAGGTTACCCGCCAGGGTCGCCTGTTGAAGCTCAACCCGGTCGGCCTCAAGCTGCTGGCGGTACTGATGCAGAAAA < 2:1037478/150‑1 TGAGGCCGACCGGGTTGAGCTTCAACAGGCGACCCTGGCGGGTAACCTCCAGGGTATCGAGGTCGTAGCTCAGGTCAGCCACCTGCAGGGTGCGCCGCCCACCGCCCTGGGCACGGCGCAGCACCGCTTCGATGC‑GCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1041989‑1041849 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgTGCCCAGGGCGGTGGGCGGCGCACCCTGCAGGTGGCTGACCTGAGCTACGACCTCGATACCCTGGAGGTTACCCGCCAGGGTCGCCTGTTGAAGCTCAACCCGGTCGGCCTCAAGCTGCTGGCGGTACTGATGCAGAAAA > NC_002947/1041877‑1042016 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |