| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1362970 = | 78 (1.590) | 5 (0.110) | 5/232 | NT | 7.5% | intergenic (+7/‑344) | phoQ/dctA‑I | sensor protein/C4‑dicarboxylate transport protein |
| ? | NC_002947 | 1363020 = | 51 (1.120) | intergenic (+57/‑294) | phoQ/dctA‑I | sensor protein/C4‑dicarboxylate transport protein | |||||
TGCCCAACGACAGGGCGATACTCCCGGGACGGATTGGCGGATTTCCGCCCGATGGCGGAATTTGTACAAGGAGGAATGGCGGAAATCCGCCCTTTGTGGATTGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1363121‑1362970‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcacaggcAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACGGACCTTGCACCCTTCATGAGCATTT > NC_002947/1363020‑1363165 TGCCCAACGACAGGGCGATACTCCCGGGACGGATTGGCGGATTTCCGCCCGATGGCGGAATTTGTACAAGGAGGAATGGCGGAAATCCGCCCTTTGTGGATTGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAG < 2:219364/150‑1TGCCCAACGACAGGGCGATACTCCCGGGACGGATTGGCGGATTTCCGCCCGATGGCGGAATTTGTACAAGGAGGAATGGCGGAAATCCGCCCTTTGTGGATTGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAG < 2:818792/150‑1 CCGGGACGGATTGGCGGATTTCCGCCCGATGGCGGAATTTGTACAAGGAGGAATGGCGGAAATCCGCCCTTTGTGGATTGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAA > 1:70148/1‑139 CCGGGACGGATTGGCGGATTTCCGCCCGATGGCGGAATTTGTACAAGGAGGAATGGCGGAAATCCGCCCTTTGTGGATTGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCAATCCACAAA < 2:70148/139‑1 CCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCC > 1:1027543/1‑138 CCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCC < 2:1027543/138‑1 GATTGACCTGCGAACGGGCTGGCACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACG > 1:177755/1‑150 ccgatctCAGGCAATCCACAAAGGGCGGATTTCCGCCATCCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACGGACCTTGCACCCTTCAT < 1:336539/143‑1 cccgaCACAGCCAACCCACAATGGGCGAATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACGGACCTTGCACCCTTCAT < 2:851210/145‑1 ACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACGGACCT > 1:1187225/1‑132 ACAGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACGGACCT < 2:1187225/132‑1 AGGCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGGAAGTACGTACCTTGCACCCGTCATGAGatcgg > 2:336539/1‑145 GCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACGGACCTTG < 1:1057080/130‑1 GCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACGGACCTTG > 2:1057080/1‑130 GCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCC < 1:1282488/112‑1 GCAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCC > 2:1282488/1‑112 TGCCCAACGACAGGGCGATACTCCCGGGACGGATTGGCGGATTTCCGCCCGATGGCGGAATTTGTACAAGGAGGAATGGCGGAAATCCGCCCTTTGTGGATTGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1363121‑1362970‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcacaggcAATCCACAAAGGGCGGATTTCCGCCATTCCTCCTTGTACAAATTCCGCCATCGGGCGGAAATCCGCCAATCCGTCCCGGGAGTATCGCCCTGTCGTTGGGCATTTATCCCCAGCAAATACGGACCTTGCACCCTTCATGAGCATTT > NC_002947/1363020‑1363165 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |