New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2063203 =	55 (1.120)	4 (0.100)	4/200	NT	10.3%	intergenic (+17/‑190)	PP_1838/PP_1839	membrane protein/hypothetical protein
	?	NC_002947	2063297 =	26 (0.660)					intergenic (+111/‑96)	PP_1838/PP_1839	membrane protein/hypothetical protein

TCAACGAACACCAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2063375‑2063203 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgggcaagcccgcgaatgggccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCCGCATT  >  NC_002947/2063297‑2063445                                                                                                                                                                                                                                                                                                                                    TCAACGAACACCAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACACTGTGCAATGCCCGTGGGg                                                                                                                                                                              >  1:763054/1‑149   AACGAACACCAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGC                                                                                                                                                                            <  1:853622/150‑1     CGAACACCAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGG                                                                                                                                                                          <  2:298887/150‑1      GAACACCAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAAGACCTGCACAAGGTCCGAACCCTGTGCAATTCCTGGGGGAGCGGG                                                                                                                                                                         >  1:323491/1‑150            CAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCC                                                                                                                                                                   >  1:250096/1‑150                     GATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGG                                                                                                                                                          <  1:1239558/150‑1                                                                                                   CCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCG                                                                            >  1:598349/1‑150                                                                                                   CCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATG                                                                                                                                                           >  1:677898/1‑71                                                                                                   CCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATG                                                                                                                                                           <  2:677898/71‑1                                                                                                     GCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTT                                                                          <  2:598349/150‑1                                                                                                         GCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACT                                                                      >  1:1177966/1‑150                                                                                                                         AGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAA                                                      <  2:1177966/150‑1                                                                                                                                                    ttcGCGGGCTTGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTC                                                                             <  1:243188/97‑1                                                                                                                                                       GCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACC                        >  1:533332/1‑150                                                                                                                                                           GCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAA                    >  1:771782/1‑150                                                                                                                                                                          GGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCGCACACCTGGTGTTC                                                                             >  1:240229/1‑78                                                                                                                                                                          GGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCGCACACCTGGTGTTC                                                                             <  2:240229/78‑1                                                                                                                                                                           GCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCCGCA    <  2:466074/150‑1                                                                                                                                                                             CCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCCGCATT  >  2:335571/1‑150                                                                                                                                                                                                                                                                                                                                    TCAACGAACACCAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2063375‑2063203 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgggcaagcccgcgaatgggccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCCGCATT  >  NC_002947/2063297‑2063445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.