New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2452643	57 (1.160)	6 (0.130)	5/238	NT	9.8%	coding (2519/3450 nt)	mfd	transcription‑repair coupling factor
	?	NC_002947	= 2452663	56 (1.200)					coding (2499/3450 nt)	mfd	transcription‑repair coupling factor

GTCGGCGCGCTCGATGACGATGGTGTTGGCGCTGGGCACGTCGATACCGGTTTCGATAATGGTCGAGGCCACCAGCACGTTGAAACGCTTGTGGTAGAAATCGCTCATCACCTGTTCCAGCTCGCGTTCGCGCATTTGCCCGTGGCCGATGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2452489‑2452643 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgaGCTGGTGCCCGAGGCACGCATCGGCA  <  NC_002947/2452663‑2452638                                                                                                                                                                                       GTCGGCGCGCTTGATGACGATGGTGTTGGCGCTGGGCACGTCGATACCGGTTTCGATAATGGTCGAGGCCACCAGCACGTTGAAACGCTTGTGGTAGAAATCGCTCATCACCTGTTCCAGCTCGCGTTCGCGCATTTGCCCGTGGCCGAT                                 >  2:199781/1‑150      CGCGCTCGATGACGATGGTGTTGGCGCTGGGCACGTCGATACCGGTTTCGATAATGGTCGAGGCCACCAGCACGTTGAAACGCTTGTGGTAGAAATCGCTCATCACCTGTTCCAGCTCGCGTTCGCGCATTTGCCCGTGGCCGATGCCGA                            <  2:266174/150‑1                          TTGGCGCTGGGCACGTCGATACCGGTTTCGATAATGGTCGAGGCCACCAGCACGTTGAAACGCTTGTGGTAGAAATCGCTCATCACCTGTTCCAGCTCGCGTTCGCGCATTTGCCCGTGGCCGATGCCGAGCTGGTGCCCGAGGCACGCA        >  1:433372/1‑150                           TGGCGCTGGGCACGTCGATACCGGTTTCGATAATGGTCGAGGCCACCAGCACGTTGAAACGCTTGTGGTAGAAATCGCTCATCACCTGTTCCAGCTCGCGTTCGCGCATTTGCCCGTGGCCGATGCCGAGCTGGTGCCCGAGGCACGCAT       <  2:433372/150‑1                                                                          AGCACGTTGAAACGCTTGTGGTAGAAATCGCTCATCACCTGTTCCAGCTCGCGTTCGCGCATTTGCCCGTGGCCGATGCCGAGCTGGTGCCCGAGGCACGCAT       >  1:191031/1‑103                                                                          AGCACGTTGAAACGCTTGTGGTAGAAATCGCTCATCACCTGTTCCAGCTCGCGTTCGCGCATTTGCCCGTGGCCGATGCCGAGCTGGTGCCCGAGGCACGCAT       <  2:191031/103‑1                                                                                              GTAGAAATCGCTCATCACCTGTTCCAGCTCGCGTTCGCGCATTTGCCCGTGGCCGATGCCGAGCTGGTGCCCGAGGCACGCATCGGCA  <  1:504328/88‑1                                                                                              GTAGAAATCGCTCATCACCTGTTCCAGCTCGCGTTCGCGCATTTGCCCGTGGCCGATGCCGAGCTGGTGCCCGAGGCACGCATCGGCA  >  2:504328/1‑88                                                                                                                                                                                       GTCGGCGCGCTCGATGACGATGGTGTTGGCGCTGGGCACGTCGATACCGGTTTCGATAATGGTCGAGGCCACCAGCACGTTGAAACGCTTGTGGTAGAAATCGCTCATCACCTGTTCCAGCTCGCGTTCGCGCATTTGCCCGTGGCCGATGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2452489‑2452643 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgaGCTGGTGCCCGAGGCACGCATCGGCA  <  NC_002947/2452663‑2452638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.