New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2522101 | 49 (1.000) | 4 (0.080) | 4/242 | NT | 6.9% | coding (3309/4446 nt) | PP_2212 | leucine‑rich repeat‑containing protein |
? | NC_002947 | = 2522133 | 60 (1.260) | coding (3341/4446 nt) | PP_2212 | leucine‑rich repeat‑containing protein |
TTCAATCGCTTCGGTTGGCGCATAACGAGATACGCCTCGACGCCCAGGCGATCAGCGTTCTGCATGGTTTGTCCAACCTTGTGCATCTTGATCTCAGTCATAACCGGCTGGAAGCGCTGGACATGAGCTTCCACCAACTTTCTCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2521953‑2522101 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgCCCAGCCGACAATGACGCAGGTTCAGGCTGGTCAGCCGAGAAA < NC_002947/2522133‑2522091 TTCAATCGCCTCGGTTGGCGCATAACGAGATACGCCGCGACGCCCAGGCGATCAGCGTTCTGCATGGTTTGTCCCACCTTGTGCCTCTTGATCTCAGTCATAACCGGCTCCAGCCGCTGCACATGCTCTTCCACCAACTTTCTCGGCTta > 2:79251/1‑148 CATCTTGATCTCAGTCATAACCGGCTGGAAGCGCTGGACATGAGCTTCCACCAACTTTCTCGGCTGCCCAGCCGACAATGACGCAGGTTCAGGCTGGTCAGCCGAGAAA > 1:948929/1‑109 CATCTTGATCTCAGTCATAACCGGCTGGAAGCGCTGGACATGAGCTTCCACCAACTTTCTCGGCTGCCCAGCCGACAATGACGCAGGTTCAGGCTGGTCAGCCGAGAAA < 2:948929/109‑1 TGATCTCAGTCATAACCGGCTGGAAGCGCTGGACATGAGCTTCCACCAACTTTCTCGGCTGCCCAGCCGACAATGACGCAGGTTCAGGCTGGTCAGC > 1:37810/1‑97 TGATCTCAGTCATAACCGGCTGGAAGCGCTGGACATGAGCTTCCACCAACTTTCTCGGCTGCCCAGCCGACAATGACGCAGGTTCAGGCTGGTCAGC < 2:37810/97‑1 TTCAATCGCTTCGGTTGGCGCATAACGAGATACGCCTCGACGCCCAGGCGATCAGCGTTCTGCATGGTTTGTCCAACCTTGTGCATCTTGATCTCAGTCATAACCGGCTGGAAGCGCTGGACATGAGCTTCCACCAACTTTCTCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2521953‑2522101 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgCCCAGCCGACAATGACGCAGGTTCAGGCTGGTCAGCCGAGAAA < NC_002947/2522133‑2522091 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |