New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3776206 =	46 (0.940)	3 (0.060)	3/238	NT	6.6%	coding (208/363 nt)	PP_3338	cytochrome bd‑type quinol oxidase
	?	NC_002947	3776224 =	41 (0.880)					coding (226/363 nt)	PP_3338	cytochrome bd‑type quinol oxidase

CCAAGCGAACTGGGCAGGATGAACAGTGTGCCTACCAGCATGAAGCCTTGGCTCTGGGGCGGCGCTGCGGCTTCCCAGATGCTGATCGACGGCGGGATGATGTTTGGCCACAGGCTGATGCCAAGGCCGCTGTAGCCCAGGAAAAT‑CTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3776357‑3776206 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggcTACAGCGGCCTTGGCATCAGCCTGTGGCCAAACATCATCCCGCCGTCGATCAGCATCTGGGAAGCCGCAGCGCCGCCCCAGAGCCAAGGCTTCATGCTGGTAGGCACACTGTTCATCCTGCCCAGTTCGCTTGGCTGATCCGACTGTTC  >  NC_002947/3776224‑3776372                                                                                                                                                                                                                                                                                                                CCAAGCGAACTGGGCAGGATGAACAGTGTGCCTACCAGCATGAAGCCTTGGCTCTGGGGCGGCGCTGCGGCTTCCCAGATGCTGATCGACGGCGGGATGATGTTTGGCCACAGGCTGATGCCAAGGCCGCTGTAGCCCAGGAAAAT‑CTGG                                                                                                                                                         >  1:714903/1‑150                  GATGAACAGTGTGCCTACCAGCATGAAGCCTTGGCTCTGGGGCGGCGCTGCGGCTTCCCAGATGCTGATCGACGGCGGGATGATGTTTGGCCACAGGCTGATGCCAAGGCCGCTGTAGCCCAGGAAAAT‑CTGG                                                                                                                                                         <  1:401536/133‑1                  GATGAACAGTGTGCCTACCAGCATGAAGCCTTGGCTCTGGGGCGGCGCTGCGGCTTCCCAGATGCTGATCGACGGCGGGATGATGTTTGGCCACAGGCTGATGCCAAGGCCGCTGTAGCCCAGGAAAAT‑CTGG                                                                                                                                                         >  2:401536/1‑133                             TGCCTACCAGCATGAAGCCGTGGCTCTGGCGCGGCGCTGCGGCTTCCCAGATGCTGATCGACGGCGGGATGATGTTTGTCCACAGGCTGATGCCAAGGCCGCTGTAGCCCAGATTTTC‑CTGGGCTACAGCGGCCTTGGCATCAGCCTGTG                                                                                                                             <  1:185449/150‑1                                                      CTGGGGCGGCGCTGCGGCTTCCCAGATGCTGATCGACGGCGGGATGATGTTTGGCCACAGGCTGATGCCAAGGCCGCTGTAGCCCA‑GATTTTCCTGGGCTACAGCGGCCTT                                                                                                                                           <  1:1059728/111‑1                                                      CTGGGGCGGCGCTGCGGCTTCCCAGATGCTGATCGACGGCGGGATGATGTTTGGCCACAGGCTGATGCCAAGGCCGCTGTAGCCCA‑GATTTTCCTGGGCTACAGCGGCCTT                                                                                                                                           >  2:1059728/1‑111                                                                                                                                                       GGCTACAGCGGCCTTGGCATCAGCCTGTGGCCAAACATCATCCCGCCGTCGATCAGCATCTGGGAAGCCGCAGCGCCGCCCCAGAGCCAAGGCTTCATGCTGGTAGGCACACTGTTCATCCTGCCCAGTTCGCTTGGCTGATCCGACTGT    <  2:925707/150‑1                                                                                                                                                         CTACAGCGGCCTTGGCATCAGCCTGTGGCCAAACATCATCCCGCCGTCGATCAGCATCTGGGAAGCCGCAGCGCCGCCCCAGAGCCAAGGCTTCATGCTGGTAGGCACACTGTTCATACTGCCCAGTTCGCTTGGCTGATCCGACTGTTC  <  2:703123/150‑1                                                                                                                                                                                                                                                                                                                CCAAGCGAACTGGGCAGGATGAACAGTGTGCCTACCAGCATGAAGCCTTGGCTCTGGGGCGGCGCTGCGGCTTCCCAGATGCTGATCGACGGCGGGATGATGTTTGGCCACAGGCTGATGCCAAGGCCGCTGTAGCCCAGGAAAAT‑CTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3776357‑3776206 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggcTACAGCGGCCTTGGCATCAGCCTGTGGCCAAACATCATCCCGCCGTCGATCAGCATCTGGGAAGCCGCAGCGCCGCCCCAGAGCCAAGGCTTCATGCTGGTAGGCACACTGTTCATCCTGCCCAGTTCGCTTGGCTGATCCGACTGTTC  >  NC_002947/3776224‑3776372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.