| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3811617 = | 38 (0.770) | 6 (0.140) | 5/224 | NT | 16.9% | intergenic (‑165/‑103) | PP_3367/PP_3368 | hypothetical protein/MFS transporter |
| ? | NC_002947 | 3811664 = | 25 (0.570) | intergenic (‑212/‑56) | PP_3367/PP_3368 | hypothetical protein/MFS transporter | |||||
TTCCATCTTGGCGACGGTGTTTTTACTGGGGAGCGGGGGGTGTTCCTGGACTGACATCTGTATCCCTATTGAAACATGCTGAAACGTTCAAGGCGGGATAATAGTCAATCGATGGCTGCAACGTCGAGGATGCTGCCCCGGCTTCCGCGACGTTGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3811776‑3811617‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgttgcagccATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAGCTTTGCCATCGGC > NC_002947/3811664‑3811809 TTCCATCTTGGCGACGGTGTTTTTACTGGGGAGCGGGGGGTGTTCCTGGACTGACATCTGTATCCCTATTGAAACATGCTGAAACGTTCAAGGCGGGATAATAGTCAATCGATGGCTGCAACGTCGAGGATGCTGCCCCGGCTTCCGCGA > 2:76374/1‑150 ATCTTGGCGACGGTGTTTTTACTGGGGAGCGGGGGGTGTTCCTGGCCAGGCCTCGGTATCCCTATTGAAACATGCTGAAACGTTCAAGGCGGGATAATAGTCAATCGATGGCAGCAACGTCGAGGATGCTGCCCCGGCTTCCGCGACGTT < 1:1042633/150‑1 TCTTGGCGACGGTGTTTTTACTGGGGGTCGTGGGGTGGGCCTGGACGGACATCTTTATCCCTATTGAAACATGCTGAAACGTTCAAGGCGGGATAATAGTCAATCCATGGCTGCAACGTCGAGGATGCTGCTCCGGCTTCCGCGACGTTG > 2:1042633/1‑150 CTTGGCGACGGTGTTTTTACTGGGGAGCGGGGGGTGTTCCTGGACTGACATCTGTATCCCTATTGAAACATGCTGAAACGTTCAAGGCGGGATAATAGTCAATCGATGGCTGCAACGTCGAGGATGCTGCCCCGGCTTCCGCGACGTTGC < 1:723598/150‑1 TGGCGACGGTGTTTTTACTGGGGAGCGGGGGGTGTTCCTGGACTGACATCTGTATCCCTATTGAAACATGCTGAAACGTTCAAGGCGGGATAATAGTCAATCGATGGCTGCAACGTCGAGGATGCTGGCCCGGCTTCCGCGACGTTGCAG < 2:423125/150‑1 TGGCGACGGTGTTTTTACTGGGGAGCGGGGGGTGTTCCTGGACTGACATCTGTATCCCTATTGAAACATGCTGAAACGTTCAAGGCGGGATAATAGTCAATCGATGGCTGCAACGTCGAGGATGCTGGCCCGGCTTCCGCGACGTTGCAG < 2:423093/150‑1 GGCGACGGTGTTTTTACTGGGGAGCGGGGGGTGTTCCTGGACTGACATCTGTATCCCTATTGAAACATGCTGAAACGTTCAAGGCGGGATAATAGTCAATCGATGGCTGCAACGTCGAGGATGCTGCCCCGGCTTCCGCGACGTTGCAGC < 1:76374/150‑1 CTGGACTGACATCTGTATCCCTATTGAAACATGCTGAAACGTTCAAGGCGGGATAATAGTCAATCGATGGCTGCAACGTCGAGGATGCTGCCCCGGCTTCCGCGACGTTGCA > 2:470329/1‑112 CTGGACTGACATCTGTATCCCTATTGAAACATGCTGAAACGTTCAAGGCGGGATAATAGTCAATCGATGGCTGCAACGTCGAGGATGCTGCCCCGGCTTCCGCGACGTTGCA < 1:470329/112‑1 GGACTGACATCTGTATCCCTATTGAAACATGCTGAAACGTTCAAGGCGGGATAATAGTCAATCGATGGCTGCAACGTCGAGGATGCTGCCCCGGCTTCCGC > 2:1031705/1‑101 GGACTGACATCTGTATCCCTATTGAAACATGCTGAAACGTTCAAGGCGGGATAATAGTCAATCGATGGCTGCAACGTCGAGGATGCTGCCCCGGCTTCCGC < 1:1031705/101‑1 CTGACATCTGTATCCCTATTGAAACATGCTGAAACGTTCAAGGCGGGATAATAGTCAATCGATGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCA > 1:631489/1‑144 CTGACATCTGTATCCCTATTGAAACATGCTGAAACGTTCAAGGCGGGATAATAGTCAATCGATGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCA < 2:631489/144‑1 TCCCTATTGAAACATGCTGAAACGTTCAAGGCGGGATAATAGTCAATCGATGGCTGCAACGTCGAGGATGCTGCCCCGGCTTCCGCGAC > 2:1111386/1‑89 TCCCTATTGAAACATGCTGAAACGTTCAAGGCGGGATAATAGTCAATCGATGGCTGCAACGTCGAGGATGCTGCCCCGGCTTCCGCGAC < 1:1111386/89‑1 GAGGATGCTGCCCCGGCTTCCGCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACAC < 1:767073/109‑1 GAGGATGCTGCCCCGGCTTCCGCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACAC > 2:767073/1‑109 GAGGATGCTGCCCCGGCTTCCGCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAG > 1:875528/1‑103 GAGGATGCTGCCCCGGCTTCCGCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAG < 2:875528/103‑1 GCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAGCTTTGCCATCG < 1:1092836/150‑1 AGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAGCTTTGCCATCGGC > 2:401815/1‑150 TTCCATCTTGGCGACGGTGTTTTTACTGGGGAGCGGGGGGTGTTCCTGGACTGACATCTGTATCCCTATTGAAACATGCTGAAACGTTCAAGGCGGGATAATAGTCAATCGATGGCTGCAACGTCGAGGATGCTGCCCCGGCTTCCGCGACGTTGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3811776‑3811617‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgttgcagccATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAGCTTTGCCATCGGC > NC_002947/3811664‑3811809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |