New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3966277	43 (0.880)	3 (0.070)	3/234	NT	5.8%	coding (426/2001 nt)	ydcP	peptidase
	?	NC_002947	= 3966297	58 (1.260)					coding (446/2001 nt)	ydcP	peptidase

CCCGCCAATCGAGCTGCATGCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3966175‑3966277 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgcggATTTGCTGCAGGTTCAGCTCCCGCGCCAGTACCAGTTGCGAGAACCCGGCCTGGTCGAGGAACTTGGCCCGTTCCAGGGTGCGGATGTCGGTCTGGGTGCTGGCATGCAGCTCGATTGGCGGGATGTCCAGCTCCATCACCCCAAG  <  NC_002947/3966297‑3966152                                                                                                                                                                                                                                                           CCCGCCAATCGAGCTGCATGCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGATTTGCTGCAGGTTCAGCTCCCGCGCCAGTACCAGTTGCGAGAACCC                                                                                                     <  1:756919/150‑1                    GCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGC                                                                                                                                                      >  1:28468/1‑82                    GCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGC                                                                                                                                                      <  2:28468/82‑1                                                                     ACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGATTTGCTGCAGGTTCAGCTCCCGCGCCA                                                                                                                        <  1:834597/63‑1                                                                     ACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGATTTGCTGCAGGTTCAGCTCCCGCGCCA                                                                                                                        >  2:834597/1‑63                                                                                                    GCGGATTTGCTGCAGGTTCAGCTCCCGCGCCAGTACCAGTTGCGAGAACCAGGCCTGGTCGAGGAACTTGGCCCGTTCCAGGGTGCGGATGTCGGTCTGGGTGCTGGCATGCAGCTCGATTGGCGGGATGTCCAGCTCCATCACCCCAAG  <  1:215638/150‑1                                                                                                                                                                                                                                                           CCCGCCAATCGAGCTGCATGCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3966175‑3966277 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgcggATTTGCTGCAGGTTCAGCTCCCGCGCCAGTACCAGTTGCGAGAACCCGGCCTGGTCGAGGAACTTGGCCCGTTCCAGGGTGCGGATGTCGGTCTGGGTGCTGGCATGCAGCTCGATTGGCGGGATGTCCAGCTCCATCACCCCAAG  <  NC_002947/3966297‑3966152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.