| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4677103 | 54 (1.100) | 5 (0.110) | 5/238 | NT | 8.9% | coding (1517/2250 nt) | ldcC | lysine decarboxylase |
| ? | NC_002947 | = 4677132 | 51 (1.090) | coding (1488/2250 nt) | ldcC | lysine decarboxylase | |||||
CCAGAGAAACTTGCTGACTACCGCTGCCGGGATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4676952‑4677103‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccccgTCTGGCCGCGCAGGACTGGCTGCTGCAGCCGGGGGCGCAATGGCATGGGTTTGGTGAAGTGGT < NC_002947/4677132‑4677070 CCAGAGAAACTTGCTGACTACCGCTGCCGGGATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCAAACCCATGCCATTGCGCCCC > 2:1209702/1‑150CCAGAGAAACTTGCTGACTACCGCTGCCGGGATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCAAACCCATGCCATTGCGCCCC < 2:723421/150‑1 CAGAGAAACTTGCTGACTACCGCTGCCGGGATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGAATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCC > 1:410543/1‑150 ACTTGCTGACTACCGCTGCCGGGATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGTCTGGC > 1:752536/1‑150 CCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCAATCCCATGCCGTTGCGCCCCCGTCTGGCCGCGCAGGACTGGCTGCCGCAGCCGG < 2:292309/150‑1 GGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGTCTGGCCGCGCAGGACTGGCTGCTGCAGCCGGGGGCGCAATGGCATGGGTTTGGTGAAGTGGT < 2:752536/150‑1 CTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGTCTGGCCGCGCAGGACTGGCTGCTGCAGCCGGGG > 1:641885/1‑99 CTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGTCTGGCCGCGCAGGACTGGCTGCTGCAGCCGGGG < 2:641885/99‑1 CCAGAGAAACTTGCTGACTACCGCTGCCGGGATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4676952‑4677103‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccccgTCTGGCCGCGCAGGACTGGCTGCTGCAGCCGGGGGCGCAATGGCATGGGTTTGGTGAAGTGGT < NC_002947/4677132‑4677070 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |