New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5276126 = | 44 (0.900) | 3 (0.060) | 3/238 | NT | 6.5% | coding (619/1437 nt) | cioA | cyanide insensitive ubiquinol oxidase subunit I |
? | NC_002947 | 5276148 = | 44 (0.940) | coding (597/1437 nt) | cioA | cyanide insensitive ubiquinol oxidase subunit I |
CAAGGTCACGAGATCATCGATGGTCGGGTGGTGCCGGTGGACTGGTTTGCGGTGGTGTTCAACCCCTCCTTCCCCTACCGCCTGATGCACATGGCTACTGCCGCGTTCGTGTCCACCGCGTTCTTCGTCGGTGCCTCGGCGGCCTGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5276276‑5276126 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaccGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGCACCACCCGACCATCGATGATCTCGTGACCTTGCGGGGTTTGCATC > NC_002947/5276148‑5276289 CAAGGTCACGAGATCATCGATGGTCGGGTGGTGCCGGTGGACTGGTTTGCGGTGGTGTTCAACCCCTCCTTCCCCTACCGCCTGATGCACATGGCTACTGCCGCGTTCGTGTCCACCGCGTTCTTCGTCGGTGCCTCGGCGGCCTGGCAC < 2:503086/150‑1 GTCGGGTGGTGCCGGTGGACTGGTTTGCGGTGGTGTTCAACCCCTCCTTCCCCTACCGCCTGATGCACATGGCTACTGCCGCGTTCGTGTCCACCGCGTTCTTCGTCGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACAC < 2:163787/150‑1 GTTTGCGGTGGTGTTCAACCCCTCCTTCCCCTACCGCCTGATGCACATGGCTACTGCCGCGTTCGTGTCCACCGCGTTCTTCGTCGGTGCCTCGGCGGCCTGG < 1:354771/103‑1 GTTTGCGGTGGTGTTCAACCCCTCCTTCCCCTACCGCCTGATGCACATGGCTACTGCCGCGTTCGTGTCCACCGCGTTCTTCGTCGGTGCCTCGGCGGCCTGG > 2:354771/1‑103 GTGCCTCGGCGGCCTGGCACCGACGAAGAACGCGG > 1:1283787/1‑35 GTGCCTCGGCGGCCTGGCACCGACGAAGAACGCGG < 2:1283787/35‑1 CTGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGCACCACCCGACCATCGATGATCTCGTGACCTTGCGGGGTTTGCATC < 1:163787/150‑1 CAAGGTCACGAGATCATCGATGGTCGGGTGGTGCCGGTGGACTGGTTTGCGGTGGTGTTCAACCCCTCCTTCCCCTACCGCCTGATGCACATGGCTACTGCCGCGTTCGTGTCCACCGCGTTCTTCGTCGGTGCCTCGGCGGCCTGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5276276‑5276126 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaccGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGCACCACCCGACCATCGATGATCTCGTGACCTTGCGGGGTTTGCATC > NC_002947/5276148‑5276289 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |