New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5560785 =	67 (1.370)	5 (0.110)	5/224	NT	7.8%	intergenic (‑238/+64)	hisZ/hflC	ATP phosphoribosyltransferase regulatory subunit/integral membrane ATP‑dependent zinc metallopeptidase
	?	NC_002947	5560822 =	59 (1.340)					intergenic (‑275/+27)	hisZ/hflC	ATP phosphoribosyltransferase regulatory subunit/integral membrane ATP‑dependent zinc metallopeptidase

AGGCATACCGCGAGAGCTTCTCGAGCAAGAGCGACGTGATGGTCCTGGACCCGAAGAACGAATTCTTCCGTTACCTGGACAAGAGCAGACCGTGATGCTCAGGCCCTGATTTTCATGCAGCGGCACCCCGCCTGGCAGCTAATGCACCAGGCGGGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5560943‑5560785 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcggggtgcCGCTGCATGAAAATCAGGGCCTGAGCATCACGGTCTGCTCTTGTCCAGGTAACGGAAGAATTCGTTCTTCGGGTCCAGGACCATCACGTCGCTCTTGCTCGAGAAGCTCTCGCGGTATGCCTGCAGGCTACGGTGGAACGCATAGAA  >  NC_002947/5560822‑5560968                                                                                                                                                                                                                                                                                                                    AGGCATACCGCGAGAGCTTCTCGAGCAAGAGCGACGTGATGGTCCTGGACCCGAAGAACGAATTCTTCCGTTACCTGGACAAGAGCAGACCGTGATGCTCAGGCCCTGATTTTCATGCAGCGGCACCCCGCCTGGCAGCTAATGCACCAG                                                                                                                                                              <  2:725659/150‑1     ATACCGCGAGAGCTTCTCGAGCAAGAGCGACGTGATGGTCCTGGACCCGAAGAACGAATTCTTCCGTTACCTGGACAAGAGCAGACCGTGATGCTCAGGCCCTGATTTTCATGCAGCGGCACCCCGCCTGGCAGCTAATGCACCAGGCGG                                                                                                                                                          >  1:1062853/1‑150       ACCGCGAGAGCTTCTCGAGCAAGAGCGACGTGATGGTCCTGGACCCGAAGAACGAATTCTTCCGTTACCTGGACAACACACGTCTGTGATGCTCAGGCCCTGATTTTCATGCAGCGGCACCCCGCCTGGCAGCTAATGCACCAGGCGGGG                                                                                                                                                        >  1:222762/1‑150        CCGCGAGAGCTTCTCGAGCAAGAGCGACGTGATGGTCCTGGACCCGAAGAACGAATTCTTCCGTTACCTGGACAAGAGCAGACCGTGATGCTCAGGCCCTGATTTTCATGCAGCGGCACCCCGCCTGGCAGCTAATGCACCAGGCGGGGT                                                                                                                                                       <  2:730845/150‑1          GCGAGAGCTTCTCGAGCAAGAGCGACGTGATGGTCCTGGACCCGAAGAACGAATTCTTCCGTTACCTGGACAAGAGCAGACCGTGATGCTCAGGCCCTGATTTTCATGCAGCGGCACCCCGCCTGGCAGCTAATGCACCAGGCGGGGTGC                                                                                                                                                     <  1:1243678/150‑1                                                                                                                           GCACCCCGCCTGGCAGCTAATGCACCAGGCGGGGTGCCGCTGCATGAAAATCAGGGCCTGAGCATCACGGTCTGCTCTTGTCCAGGTAACGGAA                                                                                            <  1:213980/94‑1                                                                                                                           GCACCCCGCCTGGCAGCTAATGCACCAGGCGGGGTGCCGCTGCATGAAAATCAGGGCCTGAGCATCACGGTCTGCTCTTGTCCAGGTAACGGAA                                                                                            >  2:213980/1‑94                                                                                                                               CCCGCCTGGCAGCTAATGCACCAGGCGGGGTGCCGCTGCATGAAAATCAGGGCCTGAGCATCACG                                                                                                                     <  1:919847/65‑1                                                                                                                               CCCGCCTGGCAGCTAATGCACCAGGCGGGGTGCCGCTGCATGAAAATCAGGGCCTGAGCATCACG                                                                                                                     >  2:919847/1‑65                                                                                                                                    CTGGCAGCTAATGCACCAGGCGGGGTGCCGCTGCATGAAAATCAGGGCCTGAGCATCACGGTCTGCTCTTGTCCAGGTAACGGAAGAATTCGTTCTTCGGGTCCAGGACCATCACGTCGCTCTTGCTCGAGAAGCTCTCGCGGTATGCCT                           >  1:1226210/1‑150                                                                                                                                                    CAGGCGGGGTGCCGGTGTGTGAAAATCAGGGCCTGAGCATCACGGTCTGCTCTTGTCCAGGTAACGGAAGAATTCGTTCTTCGGGTCCAGGACCATCACGTCGCTCTTGCTCGAGAAGCTCTCGCGGTATGCCTGCAGGCTACGGTGGAA           >  1:685086/1‑150                                                                                                                                                       GCGGGGTGCCGCTGCATGAAAATCAGGGCCTGAGCATCACGGTCTGCTCTTGTCCAGGTAACGGAAGAATTCGTTCTTCGGGTCCAGGACCATCACGTCGCTCTTGCTCGAGAAGCTCTCGCGGTATGCCTGCAGGCTACGGTGGAACGC        <  2:1226210/150‑1                                                                                                                                                             TGCCGCTGCATGAAAATCAGGGCCTGAGCATCACGGTCTGCTCTTGTCCAGGTAACGGAAGAATTCGTTCTTCGGGTCCAGGACCATCACGTCGCTCTTGCTCGAGAAGCTCTCGCGGTATGCCTGCAGGCTACGGTGGAACGCATAGAA  <  1:842181/150‑1                                                                                                                                                               CCGCTGCATGAAAATCAGGGCCTGAGCATCACGGTCTGCTCTTGTCCAGGTAACGGAAGAATTCGTTCTTCGGGTCCAGGACCATCACGTCGCTCTTGCTCGAGAAGCTCTCG                                     <  1:1172760/113‑1                                                                                                                                                               CCGCTGCATGAAAATCAGGGCCTGAGCATCACGGTCTGCTCTTGTCCAGGTAACGGAAGAATTCGTTCTTCGGGTCCAGGACCATCACGTCGCTCTTGCTCGAGAAGCTCTCG                                     >  2:1172760/1‑113                                                                                                                                                                                                                                                                                                                    AGGCATACCGCGAGAGCTTCTCGAGCAAGAGCGACGTGATGGTCCTGGACCCGAAGAACGAATTCTTCCGTTACCTGGACAAGAGCAGACCGTGATGCTCAGGCCCTGATTTTCATGCAGCGGCACCCCGCCTGGCAGCTAATGCACCAGGCGGGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5560943‑5560785 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcggggtgcCGCTGCATGAAAATCAGGGCCTGAGCATCACGGTCTGCTCTTGTCCAGGTAACGGAAGAATTCGTTCTTCGGGTCCAGGACCATCACGTCGCTCTTGCTCGAGAAGCTCTCGCGGTATGCCTGCAGGCTACGGTGGAACGCATAGAA  >  NC_002947/5560822‑5560968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.