New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5591617 =	48 (0.980)	11 (0.240)	8/236	NT	19.1%	coding (316/630 nt)	nudF	ADP‑ribose/sugar pyrophosphatase
	?	NC_002947	5591646 =	48 (1.040)					coding (287/630 nt)	nudF	ADP‑ribose/sugar pyrophosphatase

GCGGTATGCGTGCTGCCGTACGACCCAGCGCGCGATGAAGTGGTGCTGATCGAACAGTTCCGCGTGGGCGCCCTGGACAAGGTCGCCAACCCCTGGCTGATCGAGATGGTTGCCGGGCTGATCGACAAAGACGAGCAGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5591758‑5591617 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcccgGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGGTCGTACGGCAGCACGCATACCGCATCGTGGCGCACAAACAGTTCGCGACTGATCTCG  >  NC_002947/5591646‑5591792                                                                                                                                                                                                                                                                                                   GCGGTATGCGTGCTGCCGTACGACCCAGCGCGCGATGAAGTGGTGCTGATCGAACAGTTCCGCGTGGGCGCCCTGGACAAGGTCGCCAACCCCTGGCTGATCGAGATGGTTGCCGGGCTGCTCGTCTTTGTCGATCAGCCCGGCAACCAT                                                                                                                                             <  1:735487/150‑1                                                                                                                  CGGGCTGATCGACAAAGACGAGCAGCCCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGGTCGTACGGCAGCACGCATACCGCATCGTGGC                            >  2:1004728/1‑150                                                                                                                    GGCTGATCGACAAAGACGAGCAGCCCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGGTCGTACGGCAGCACGCATACCGCATCGTGGCGC                          >  1:644082/1‑150                                                                                                                    GGCTGATCGACAAAGACGAGCAGCCCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGGTCGTACGGCAGCACGCATACCGCATCGTGGC                            >  1:614121/1‑148                                                                                                                    GGCTGATCGACAAAGACGAGCAGCCCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGGTCGTACGGCAGCACGCATACCGCATCGTGGC                            <  2:614121/148‑1                                                                                                                    GGCTGATCGACAAAGACGAGCAGCCCGACAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCACACGCGGAACTGTTC                                                                                       <  1:57485/89‑1                                                                                                                    GGCTGATCGACAAAGACGAGCAGCCCGACAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCACACGCGGAACTGTTC                                                                                       >  2:57485/1‑89                                                                                                                       TGATCGACAAAGACGAGCAGCCCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTT                                                                                        >  1:332390/1‑85                                                                                                                       TGATCGACAAAGACGAGCAGCCCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTT                                                                                        <  2:332390/85‑1                                                                                                                         ATCGACAAAGACGAGCAGCCCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGGTCGTACGGCAGCACGCATACCGCATCGTGGCGCACAAA                     <  1:1004728/150‑1                                                                                                                         ATCGACAAAGACGAGCAGCCCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGGTCGTACGGCAGCACGCATACCGCATCGTGGCGCACAAA                     <  2:644082/150‑1                                                                                                                                   ACGAGCAGCCCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGGTCGTACGGCAGCACGCATACCGCATCGTGGCGCACAAACAGTTCGCGA           <  2:735487/150‑1                                                                                                                                          GCCCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGGTCGTACGGCAGCACGCATACCGCATCGTGGC                            >  1:1067875/1‑126                                                                                                                                          GCCCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGGTCGTACGGCAGCACGCATACCGCATCGTGGC                            <  2:1067875/126‑1                                                                                                                                          GCCCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGG                                                           >  2:74115/1‑95                                                                                                                                          GCCCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGG                                                           <  1:74115/95‑1                                                                                                                                           CCCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGGTCGTACGGCAGCACGCATACCGCATCGTGGCGCACAAACAGTTCGCGACTGATCTC   <  2:306332/150‑1                                                                                                                                           CCCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGGTCGTACGGCAGCACGCATACCGCATCGTGGCGCACAAACAGTTCGCGACTGATCTC   >  1:1204578/1‑150                                                                                                                                           CCCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGGTCGTACGGCAGCACGCATACCGCATC                                 >  2:435396/1‑120                                                                                                                                           CCCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGGTCGTACGGCAGCACGCATACCGCATC                                 <  1:435396/120‑1                                                                                                                                            CCGGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGGTCGTACGGCAGCACGCATACCGCATCGTGGCGCACAAACAGTTCGCGACTGATCTCG  <  1:92299/150‑1                                                                                                                                                                                                                                                                                                   GCGGTATGCGTGCTGCCGTACGACCCAGCGCGCGATGAAGTGGTGCTGATCGAACAGTTCCGCGTGGGCGCCCTGGACAAGGTCGCCAACCCCTGGCTGATCGAGATGGTTGCCGGGCTGATCGACAAAGACGAGCAGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5591758‑5591617 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcccgGCAACCATCTCGATCAGCCAGGGGTTGGCGACCTTGTCCAGGGCGCCCACGCGGAACTGTTCGATCAGCACCACTTCATCGCGCGCTGGGTCGTACGGCAGCACGCATACCGCATCGTGGCGCACAAACAGTTCGCGACTGATCTCG  >  NC_002947/5591646‑5591792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.