New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5903827 =	51 (1.040)	7 (0.160)	7/218	NT	14.2%	intergenic (+27/+80)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	5903887 =	40 (0.940)					intergenic (+87/+20)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease

CAGCAGGCGATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5903990‑5903827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTAC  >  NC_002947/5903887‑5904033                                                                                                                                                                                                                                                                                                                         CAGCAGGCGATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCC                                                                                                                                                                   <  1:783791/150‑1     AGGCGATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGT                                                                                                                                                               <  2:177103/150‑1     AGGCGATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGT                                                                                                                                                               <  1:753199/150‑1      GGCGATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTG                                                                                                                                                              <  1:1053001/150‑1       GCGATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGG                                                                                                                                                             <  1:290718/150‑1             GAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGG                                                                                                                                                       <  1:209671/150‑1               AGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGG                                                                                                                                                       >  1:159256/1‑148               AGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGG                                                                                                                                                       <  2:159256/148‑1                          CAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGC                                                                                                                                                         <  2:894180/135‑1                          CAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGC                                                                                                                                                         >  1:894180/1‑135                             CCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGT                                                                                                                                                               <  2:605008/126‑1                             CCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGT                                                                                                                                                               >  1:605008/1‑126                                                                                       TGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTT                                                                                                <  2:993899/131‑1                                                                                       TGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTT                                                                                                >  1:993899/1‑131                                                                                                     GCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACC                                                               >  1:1063495/1‑150                                                                                                             GCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGA                                                       <  2:1063495/150‑1                                                                                                                  CACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGTTGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCC                                                  >  1:720956/1‑150                                                                                                                            TCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCG                                        >  1:221272/1‑150                                                                                                                                  CCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGC                                  <  2:221272/150‑1                                                                                                                                                      CCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGG              >  2:1120609/1‑150                                                                                                                                                       CTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGC             <  2:290718/150‑1                                                                                                                                                          TGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCAACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGC          >  1:760709/1‑150                                                                                                                                                              AGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAA      <  1:688448/150‑1                                                                                                                                                                 GGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTA   <  2:1053001/150‑1                                                                                                                                                                  GGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTAC  <  2:783791/150‑1                                                                                                                                                                  GGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTAC  <  1:16610/150‑1                                                                                                                                                                                                                                                                                                                         CAGCAGGCGATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5903990‑5903827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTAC  >  NC_002947/5903887‑5904033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.