| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5947182 | 35 (0.710) | 3 (0.070) | 3/226 | NT | 7.6% | intergenic (‑118/+88) | ubiD/rho | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho |
| ? | NC_002947 | = 5947205 | 41 (0.920) | intergenic (‑141/+65) | ubiD/rho | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho | |||||
TTCCAGGCCACGAATGAAGTCGCGCAAGTCGCGATACTGCATGCAGGAGCCTCGTGTTGGCCGTATCGGTCGGGGTGCAGAGTGTAGCGCCGTTCGGGCCTTGTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5947023‑5947182‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcccgctcctGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGCGAAGGGATGCAAAGCGGCCCCAATGCATTTTCACCCCCAAACAAGGCCCGAACGGCGCTACACTCTGCACCCCGACCGATACGGCCAACACGAGGCTCCTGCATGCA < NC_002947/5947205‑5947060 TTCCAGGCCACGAATGAAGTCGCGCAAGTCGCGATACTGCATGCAGGAGCCTCGTGTTGGCCGTATCGGTCGGGGTGCAGAGTGTAGCGCCGTTCGGGCCTTGTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAA > 2:1001629/1‑150 AGGCCACGAATGAAGTCGCGCAAGTCGCGATACTGCATGCAGGAGCCTCGTGTTGGCCGTATCGGTCGGGGTGCAGAGTGTAGCGCCGTTCGGGCCTTGTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCC > 1:1059684/1‑150 AGGCCACGAATGAAGTCGCGCAAGTCGCGATACTGCATGCAGGAGCCTCGTGTTGGCCGTATCGGTCGGGGTGCAGAGTGTAGCGCCGTTCGGGCCTTGTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCC > 2:444509/1‑150 GCCACGAATGAAGTCGCGCAAGTCGCGATACTGCATGCAGGAGCCTCGTGTTGGCCGTATCGGTCGGGGTGCAGAGTGTAGCGCCGTTCGGGCCTTGTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGC > 2:1072809/1‑150 CACGAATGAAGTCGCGCAAGTCGCGATACTGCATGCAGGAGCCTCGTGTTGGCCGTATCGGTCGGGGTGCAGAGTGTAGCGCCGTTCGGGCCTTGTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTC < 1:1072809/150‑1 CACGAATGAAGTCGCGCAAGTCGCGATACTGCATGCAGGAGCCTCGTGTTGGCCGTATCGGTCGGGGTGCAGAGTGTAGCGCCGTTCGGGCCTTGTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTC > 1:761632/1‑150 CACGAATGAAGTCGCGCAAGTCGCGATACTGCATGCAGGAGCCTCGTGTTGGCCGTATCGGTCGGGGTGCAGAGTGTAGCGCCGTTCGGGCCTTGTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTC < 1:40357/150‑1 ATGAAGTCGCGCAAGTCGCGATACTGCATGCAGGAGCCTCGTGTTGGCCGTATCGGTCGGGGTGCAGAGTGTAGCGCCGTTCGGGCCTTGTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTCCTCCA > 2:330385/1‑150 CAGGAGCCTCGTGTTGGCCGTATCGGGCGGGGTGCAGAGTGTAGCGCCGTTCGGGCCTTGTTTGGGAGTCCAACCTTACCGGGCTCGCTTTGCATCCCTTCGCGGAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGC < 2:44134/150‑1 AGGAGCCTCGTGTTGGCCGTATCGGTCGGGGTGCAGAGTGTAGCGCCGTTCGGGCCTTGTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCT > 2:555433/1‑150 CGTGTTGGCCGTATCGGTCGGGGTGCAGAGTGTAGCGCCGTTCGGGCCTTGTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCG < 2:26415/103‑1 CGTGTTGGCCGTATCGGTCGGGGTGCAGAGTGTAGCGCCGTTCGGGCCTTGTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCG > 1:26415/1‑103 TCGGTCGGGGTGCAGAGTGTAGCGCCGTTCGGGCCTTGTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGCGAAGGGATGCAAAGCG < 1:555433/150‑1 AAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGCGAAGGGATGCAAAGCGGCCCCAATGCATTTTCACCCCCAAACAAGGCCCGAACGGCGCTACACTCTGCACCCCGACCGATACGGCCAACACGAGGCTCC > 2:909829/1‑150 gcgCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGGGAAGGGATGCAAAGCGGCCCCAATGCATTTTCACCCCCAAACAAGGCCCGAACGGCGCTACACTCTGCACCCCGACCGATACGGCCAACACGCGACTCCTG > 1:452156/4‑150 GCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGCGAAGGGATGCAAAGCGGCCCCAATGCATTTTCACCCCCAAACAAGGCCCGAACGGCGCTACACTCTGCACCCCGACCGATACGGCCAACACGAGGCTCCTG > 2:1206755/1‑150 CCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGCGAAGGGATGCAAAGCGGCCCCAATGCATTTTCACCCCCAAACAAGGCCCGAACGGCGCTACACTCTGCACCCCGACCGATACGGCCAACACGAGGCTCCTGC > 2:1059684/1‑150 CCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGCGAAGGGATGCAAAGCGGCCCCAATGCATTTTCACCCCCAAACAAGGCCCGAACGGCGCTACACTCTGCACCCCGACCGATACGGCCAACACGAGGCTCCTGCA > 2:1005682/1‑150 CGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGCGAAGGGATGCAAAGCGGCCCCAATGCATTTTCACCCCCAAACAAGGCCCGAACGGCGCTACACTCTGCACCCCGACCGATACGGCCAACACGAGGCTCCTGCAT < 2:644730/150‑1 TCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGCGAAGGGATGCAAAGCGGCCCCAATGCATTTTCACCCCCAAACAAGGCCCGAACGGCGCTACACTCTGCACCCCGACCGATACGGCCAACACGAGGCTCCTGCATGCA > 2:340649/1‑150 TTCCAGGCCACGAATGAAGTCGCGCAAGTCGCGATACTGCATGCAGGAGCCTCGTGTTGGCCGTATCGGTCGGGGTGCAGAGTGTAGCGCCGTTCGGGCCTTGTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5947023‑5947182‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcccgctcctGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTCCGCGAAGGGATGCAAAGCGGCCCCAATGCATTTTCACCCCCAAACAAGGCCCGAACGGCGCTACACTCTGCACCCCGACCGATACGGCCAACACGAGGCTCCTGCATGCA < NC_002947/5947205‑5947060 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |