New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6019326	59 (1.200)	5 (0.120)	4/204	NT	8.5%	intergenic (‑71/+74)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
	?	NC_002947	= 6019356	59 (1.470)					intergenic (‑101/+44)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase

CTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCG‑CGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6019157‑6019326 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcttgcccgctcccacaggAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTCCAGGCCCTGCGCCACAA  <  NC_002947/6019356‑6019209                                                                                                                                                                                                                                                                                                                                 CTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCG‑CGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAACTCGGTGGTGGATTATTCGCG                                                                                                                                                                          >  1:163008/1‑150 CTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGAT‑AGAACGCCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTACGGTTGAAATCGGTGGTGGTTTATTCGCG                                                                                                                                                                          >  1:22751/1‑150  TTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTACCGTGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCG‑CGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGG                                                                                                                                                                         <  1:708030/150‑1   TGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCG‑CGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGG                                                                                                                                                                        <  2:7283/150‑1    GATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCG‑CGGGCGGGACGCATATCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGC                                                                                                                                                                       <  2:668189/150‑1      TCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCG‑CGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTT                                                                                                                                                                     >  2:401955/1‑150        ACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCG‑CGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGC                                                                                                                                                                   >  1:118091/1‑150          GGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCG‑CGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCac                                                                                                                                                                 >  1:65093/1‑148          GGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGATGTGGCGCAGGGCCTGGAGGTCGATCAGGGCG‑CGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTGCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCC                                                                                                                                                                 >  1:6647/1‑150              AGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCG‑CGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTC                                                                                                                                                             <  1:1052088/150‑1                GGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCG‑CGGGCGGGACGCATAGAGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCC                                                                                                                                                           >  1:1076839/1‑150                 GCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCGGGGCG‑CGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCA                                                                                                                                                          <  1:523938/150‑1                   TTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCG‑CGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGTTCCCACA                                                                                                                                                        >  2:558466/1‑150                   TTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCG‑CGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGG                                                                                                                                                                         >  2:1032459/1‑133                   TTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCG‑CGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGG                                                                                                                                                                         <  1:1032459/133‑1                                                                GGCCTGGAGGTCGATCAGGGCG‑CGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGG                                                                                                           <  1:243383/150‑1                                                                             ATCAGGGCG‑CGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGG                                                                                                                 >  2:1256771/1‑131                                                                             ATCAGGGCG‑CGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGG                                                                                                                 <  1:1256771/131‑1                                                                                          GCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGG                                                                                                           >  2:39464/1‑125                                                                                          GCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGG                                                                                                           <  1:39464/125‑1                                                                                                                                                     GCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGA                       <  1:929796/150‑1                                                                                                                                                         GCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTC                   >  2:962218/1‑150                                                                                                                                                           TTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTCCA                 >  1:396119/1‑150                                                                                                                                                              CCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTCCAGGC              >  2:384050/1‑150                                                                                                                                                               CCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACTACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTCCAGGCC             >  2:400887/1‑150                                                                                                                                                               CCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTCCAGGCC             >  2:931254/1‑150                                                                                                                                                                   cCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTCCAGGCCCTGC         <  1:211497/149‑1                                                                                                                                                                      CACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACACGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTCATCCACACCCAGGCCCTGCGCC      >  2:163008/1‑150                                                                                                                                                                      CACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCT                                                                                                                     <  2:106630/39‑1                                                                                                                                                                      CACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCT                                                                                                                     >  1:106630/1‑39                                                                                                                                                                       ACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTCCAGGCCCTGCGCCA     >  2:1269201/1‑150                                                                                                                                                                       ACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTCCAGGCCCTGCGCCA     >  2:541278/1‑150                                                                                                                                                                       ACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATC                         >  1:824960/1‑130                                                                                                                                                                       ACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATC                         <  2:824960/130‑1                                                                                                                                                                         AGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCTCTATGCGTCCCGCCCGCGCCCTGATCGACCTCCAGGCCCTGCGCCACA   >  2:1076839/1‑150                                                                                                                                                                          GGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTCCAGGCCCTGCGCCACAA  <  1:541278/150‑1                                                                                                                                                                                                                                                                                                                                 CTTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGCCTGGAGGTCGATCAGGGCG‑CGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6019157‑6019326 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcttgcccgctcccacaggAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTCCAGGCCCTGCGCCACAA  <  NC_002947/6019356‑6019209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.