New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 171284 = | NA (NA) | 3 (0.060) | 3/238 | NT | NA | intergenic (+465/‑105) | PP_0159/PP_16SA | family III CoA‑transferase/16S ribosomal RNA |
? | NC_002947 | 171337 = | NA (NA) | intergenic (+518/‑52) | PP_0159/PP_16SA | family III CoA‑transferase/16S ribosomal RNA |
GACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAAGCTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAAAACCCAAGCAGTATTGAACTGAAGAGTTTGATCATGGCTCAGATT > NC_002947/171150‑171403 | gACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAAGCTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGt > 2:641536/1‑148 (MQ=32) gACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAAGCTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGt < 1:641536/148‑1 (MQ=32) tctGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAAGCTCTTAACCAAACGCTCTTTAACAAATCGAATCAATCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCg > 1:797376/1‑150 (MQ=17) gTAGAATGCGCGCCTCGGTTGAGACGAAAAGCTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATa > 1:966774/1‑150 (MQ=32) gcgcgcCTCGGTTGAGACGAAAAGCTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCAttt < 2:797376/150‑1 (MQ=32) gaCGAAAAGCTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCa > 2:227007/1‑150 (MQ=32) gAAAAGCTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGt > 2:1116586/1‑150 (MQ=32) aaaGCTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGttt > 2:286118/1‑150 (MQ=32) aaGCTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGAATCACAAGTGACCATGCGAGAAATcac > 2:303786/1‑119 (MQ=17) aaGCTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGAATCACAAGTGACCATGCGAGAAATcac < 1:303786/119‑1 (MQ=17) ctctTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGa > 1:627829/1‑137 (MQ=33) ctctTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGa < 2:627829/137‑1 (MQ=32) ttAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGttt > 1:342071/1‑150 (MQ=32) tttAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAAAACCCAAg < 2:322199/150‑1 (MQ=32) tttAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAAAACCCAAg > 1:322199/1‑150 (MQ=32) tttAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAAAACCCAAg < 2:840521/150‑1 (MQ=32) ttAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAAAACCCAAGc > 1:886543/1‑150 (MQ=32) aaCAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTAAGCTACAAAAAGATTATCAGCATCACAAGTGACCGTGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAAAACCCAAGCAg > 1:32860/1‑150 (MQ=11) aCAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAAAACCCAAGCAGt < 2:1249851/150‑1 (MQ=32) aaaTCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAAAACCCAAGCAGTAt > 1:466717/1‑150 (MQ=32) cGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAAAACCCAAGCAGTATTGaa < 2:466717/150‑1 (MQ=32) aTCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGa > 1:1183131/1‑107 (MQ=33) aTCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGa < 2:1183131/107‑1 (MQ=33) tCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAAAACCCAAGCAGTATTGAACTGa > 1:1177172/1‑150 (MQ=32) cAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAAAACCCAAGCAGTATTGAACTGAAGAGt < 1:286118/150‑1 (MQ=32) aTTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAg < 1:843661/110‑1 (MQ=33) aTTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAg > 2:843661/1‑110 (MQ=33) tgtgAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAAAACCCAAGCAGTATTGAACTGAAGAGTTTGATCATGGCTCAGAt > 1:1270357/1‑150 (MQ=32) gtgAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTAATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAAAACCCAAGCAGTATTGAACTGAAGAGTTTGATCATGGCTCAGAtt < 2:512662/150‑1 (MQ=17) | GACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAAGCTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTATGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGACCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGTTTAGGGTTTCTTAAAAACCCAAGCAGTATTGAACTGAAGAGTTTGATCATGGCTCAGATT > NC_002947/171150‑171403 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |