New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	283827 =	43 (0.880)	4 (0.080)	3/244	NT	8.6%	coding (1277/2004 nt)	betT‑II	choline/carnitine/betaine transporter
	?	NC_002947	283875 =	43 (0.900)					coding (1325/2004 nt)	betT‑II	choline/carnitine/betaine transporter

GGTGATAAATCACGGCATGACCGCACTGGGTCAGTCGGCGTTGGACAACCCATCGATGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTGCACTGATCACCAGTGCGCTGTTGTTCGCTGGCAGCATCGA  >  NC_002947/283684‑283974                                                                                                                                                |                                                                                                                                                    ggTGATAAATCACGGCATGACCGCACTGGGTCAGTCGGCGTTGGACAACCCATCGATGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGc                                                                                                                                               <  1:1061336/150‑1 (MQ=255)  gTGATAAATCACGGCACGACCGCACTGGGTCAGTCGGCGTTGGACAACCCATCGATGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGcc                                                                                                                                              >  1:395492/1‑150 (MQ=255)       aaaTCACGGCATGACCGCACTGGGTCAGTCGGCGTTGGACAACCCATCGATGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTc                                                                                                                                         >  2:556033/1‑150 (MQ=255)         aTCACGGGATGACCGCACTGGGACAGGCGGGTGTGGAGAACCCATGGAGGATCCTGGACCTGCGGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCATCTTCGTGTTCTTCGTCACCTCGGCCGACTCgg                                                                                                                                       >  2:719656/1‑150 (MQ=255)                      cGCACTGGGTCAGTCGGCGTTGGACAACCCATCGATGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCt                                                                                                                          <  2:246469/150‑1 (MQ=255)                        cgatctgTCAGTCGGCGTTGGACAACCCATCGATGAGCCTGTACGTGCTGCTGGAAACCTACCCCTGGAGCAAGGAAGTGATCGCCACCACGGTGTTCATCAGCTTCGTATAACTGGGGACCTCGGCCGACTCGGGCACCGTGGTGCTGt                                                                                                                        <  1:1265854/144‑1 (MQ=255)                               tCAGTCGGCGTTGGACAACCCATCGATGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGAAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCCCCGGTTCCGACTCGGGCACCGTGGTGCTGTcagatcg                                                                                                                 >  2:1265854/1‑144 (MQ=255)                                  gTCGGCGTTGGACAACCCATCGATGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTc                                                                                                              >  2:972459/1‑150 (MQ=255)                                        cgaatcgatgctgccagcgaacaacagcgcactggtgatcagtgcagtcatcgccccccaaaagatacgcagccagttcggcccatcttcatcagcgtcaccacCCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCaa                                                                                                        >  1:1152853‑M1/105‑150 (MQ=255)                                          aatcgatgctgccagcgaacaacagcgcactggtgatcagtgcagtcatcgccccccaaaagatacgcagccagttcggcccatcttcatcagcgtcaccacCCTTGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAgg                                                                                                      >  1:1039819‑M1/103‑150 (MQ=255)                                                aCCCATCGATGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGgtggtg                                                                                                <  2:149469/150‑1 (MQ=255)                                                 cccATCGATGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCg                                                                                                                                                 >  1:1101331/1‑100 (MQ=255)                                                 cccATCGATGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCg                                                                                                                                                 <  2:1101331/100‑1 (MQ=255)                                                 cccACCGATGAGCCTGTACCCGCTGCTGGAAACCTACCCCTGTAGCAAGGCAGTGATCGCCACCCCGGTGTTAAACCGCTTAGTGTTATTAGTCCCCAGAGCATGTTGGGGCAGCTTTGTACTGTCATCCGTGGCGGCCAAGCGTGGTGa                                                                                               <  2:655609/150‑1 (MQ=255)                                                   cATCGATGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACg                                                                                             >  1:1268243/1‑150 (MQ=255)                                                        aTGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTc                                                                                                                                         <  1:499753/101‑1 (MQ=255)                                                        aTGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTc                                                                                                                                         >  2:499753/1‑101 (MQ=255)                                                        aTGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCtgat                                                                                        <  2:1268243/150‑1 (MQ=255)                                                         tGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCtgatg                                                                                       >  1:1131731/1‑150 (MQ=255)                                                            gCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAg                                                                                    >  2:1049191/1‑150 (MQ=255)                                                              cTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGAt                                                                                  >  1:1075576/1‑150 (MQ=255)                                                              aacagcgcactggtgatcagtgcagtcatcgccccccaaaagatacgcagccagttcggcccatcttcatcagcgtcaccacCCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAgg                                                                                                      >  2:648284‑M1/83‑130 (MQ=255)                                                              aacagcgcactggtgatcagtgcagtcatcgccccccaaaagatacgcagccagttcggcccatcttcatcagcgtcaccacCCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAgg                                                                                                      <  1:648284‑M1/48‑1 (MQ=255)                                                                 tACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATggg                                                                               <  2:1075576/150‑1 (MQ=255)                                                                    ctgctgctgGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATG‑AGATGGGCCGa                                                                           >  2:670895/1‑150 (MQ=255)                                                                          ctgGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCAACACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTgg                                                                      >  1:773988/1‑150 (MQ=255)                                                                            ggAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCt                                                                    <  2:50022/150‑1 (MQ=255)                                                                                        cTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTg                                                                       <  2:237896/135‑1 (MQ=255)                                                                                        cTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTg                                                                       >  1:237896/1‑135 (MQ=255)                                                                                           gAGCAAGGCAGTTATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTgggg                                                     <  1:537236/150‑1 (MQ=255)                                                                                             gCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTgggggg                                                   >  1:837704/1‑150 (MQ=255)                                                                                              cAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGc                                                  >  2:1089010/1‑150 (MQ=255)                                                                                                      tGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTg                                          <  1:1089010/150‑1 (MQ=255)                                                                                                        aTCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTGCa                                        >  2:446590/1‑150 (MQ=255)                                                                                                            ccaccaCGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTGCACTGa                                    >  2:1048989/1‑150 (MQ=255)                                                                                                            ccaccaCGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTGCACTGa                                    <  1:446590/150‑1 (MQ=255)                                                                                                                cacGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGTGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTGCACTGATCAc                                <  1:1049191/150‑1 (MQ=255)                                                                                                                cacGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTGCACTGATCAc                                <  1:1048989/150‑1 (MQ=255)                                                                                                                  cGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTGCACTGATCACCa                              <  2:1131731/150‑1 (MQ=255)                                                                                                                      gtTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATG‑AGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTGCACTGGTGATCAGTgca                         <  1:670895/150‑2 (MQ=255)                                                                                                                        tcatcaGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTGCACTGATCACCAGTgcgc                        <  1:556033/150‑1 (MQ=255)                                                                                                                         catcaGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCCAGGGTGGTGACGCTGATGAAGATGGGCCCCACTGGCTGGGTAGCTTTTGGGGGGCGATGACTGCACTGATCACCAGTGCGCt                       >  1:607758/1‑150 (MQ=255)                                                                                                                          atcaGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGa                                             <  1:68358/127‑1 (MQ=255)                                                                                                                          atcaGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGa                                             >  2:68358/1‑127 (MQ=255)                                                                                                                           tcaGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTCTCTTTTGGGGGGCGATGACTGCACTGATCACCAGTGCGCtgt                     >  1:979429/1‑150 (MQ=255)                                                                                                                           tcaGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTGCa                                        <  1:828558/131‑1 (MQ=255)                                                                                                                           tcaGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCGTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTGCa                                        >  2:828558/1‑131 (MQ=255)                                                                                                                                  cGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTGCACTGATCACCAGTGCGCTGTTGTTCGc              <  2:773988/150‑1 (MQ=255)                                                                                                                                    tgtTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTGCACTGATCACCAGTGCGCTGTTGTTCGCTg            <  2:745288/150‑1 (MQ=255)                                                                                                                                             tCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTGCACTGATCACCAGTGCGCTGTTGTTCGCTGGCAGCATCg   >  2:1029511/1‑150 (MQ=255)                                                                                                                                             tCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTGCACTGATCACCAGTGCGCTGTTGTTCGCTGGCAGCATCg   >  1:17166/1‑150 (MQ=255)                                                                                                                                              cACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTGCACTGATCACCAGTGCGCTGTTGTTCGCTGGCAGCATCGa  >  1:1113737/1‑150 (MQ=255)                                                                                                                                               aCCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTgg                                                                      >  2:499626/1‑81 (MQ=255)                                                                                                                                               aCCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTgg                                                                      <  1:499626/81‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    GGTGATAAATCACGGCATGACCGCACTGGGTCAGTCGGCGTTGGACAACCCATCGATGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCTCGGCCGACTCGGGCACCGTGGTGCTGTCGACCTTGTCGGCCAAGGGTGGTGACGCTGATGAAGATGGGCCGAACTGGCTGCGTATCTTTTGGGGGGCGATGACTGCACTGATCACCAGTGCGCTGTTGTTCGCTGGCAGCATCGA  >  NC_002947/283684‑283974

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.