New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 625064	27 (0.550)	3 (0.070)	5/232	NT	10.2%	intergenic (‑155/+28)	PP_0537/ppa	transcriptional regulator/inorganic pyrophosphatase
	?	NC_002947	= 625068	28 (0.620)					intergenic (‑159/+24)	PP_0537/ppa	transcriptional regulator/inorganic pyrophosphatase

CGAGTGTAGCGGCGGGTTGCCAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCTTTGTAGTTGGCAAAGAAGTGCT  >  NC_002947/624915‑625213                                                                                                                                                      |                                                                                                                                                       cgAGTGTAGCGGCGGGTTGCCAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGC                                                                                                                                                        <  2:1162703‑M1/150‑1 (MQ=255)        aGCGGCGGGTTGCCAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAgcg                                                                                                                                                 <  1:230293‑M2/150‑4 (MQ=255)         gcggcgGGTTGCCAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAgcgg                                                                                                                                                >  1:209222‑M2/1‑146 (MQ=255)            gcggGTTGCCAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAgcggggg                                                                                                                                             <  2:537189‑M2/150‑8 (MQ=255)              gggTTGCCAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAgcggggttt                                                                                                                                           >  1:791633‑M2/1‑141 (MQ=255)                gTTGCCAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAGAAACCCCGCtttggcggggttttt                                                                                                                                         <  2:452002‑M1/150‑16 (MQ=255)                     cAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCa                                                                                                                                    >  1:683400/1‑150 (MQ=255)                     cAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCa                                                                                                                                    >  2:597522/1‑150 (MQ=255)                      aGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAgcgg                                                                                                                                                <  1:563578‑M2/137‑5 (MQ=255)                      aGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAgcgg                                                                                                                                                >  2:563578‑M2/1‑133 (MQ=255)                      aGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCa                                                                                                                                    >  2:153777/1‑149 (MQ=255)                      aGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCa                                                                                                                                    <  1:153777/149‑1 (MQ=255)                      aGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCAAGCAGTGAGCGCGTTCCATTTAGGCATGAAAAACCCCGCAAAAGCGGGGTTTCCCTgaaa                                                                                                                                   >  2:552841/1‑147 (MQ=255)                              aaTGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATc                                                                                                                           >  2:7584/1‑150 (MQ=255)                               aTGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCa                                                                                                                          <  1:417119/150‑1 (MQ=255)                                       ggTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGt                                                                                                                 <  2:473811/150‑1 (MQ=255)                                         tgtTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAg                                                                                                               <  1:7584/150‑1 (MQ=255)                                              aCGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGc                                                                                                          <  2:683400/150‑1 (MQ=255)                                                       gTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGAttt                                                                                                 <  1:552841/150‑1 (MQ=255)                                                        tACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCTTTGgcggggtttttcatgcctgaa                                                                                                                               <  2:853737‑M2/120‑22 (MQ=255)                                                        tACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCTTTGgcggggtttttcatgcctgaa                                                                                                                               >  1:853737‑M2/1‑99 (MQ=255)                                                        tACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTg                                                                                                <  2:992228/150‑1 (MQ=255)                                                                   gCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAgcggg                                                                                                                                               >  1:659071‑M2/1‑88 (MQ=255)                                                                   gCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAgcggg                                                                                                                                               <  2:659071‑M2/93‑6 (MQ=255)                                                                         tGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGggc                                                                               <  2:355483/150‑1 (MQ=255)                                                                                    ggTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGgcgc                                                                    <  2:439492/150‑1 (MQ=255)                                                                                       gtAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGAGTTCCATTCAGTCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCtt                                                                 >  2:567650/1‑150 (MQ=255)                                                                                           gACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCTTTGgcggggtttttcat                                                                                                                                      >  1:1080477‑M2/1‑64 (MQ=255)                                                                                           gACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCTTTGgcggggtttttcat                                                                                                                                      <  2:1080477‑M2/78‑15 (MQ=255)                                                                                           gACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCa                                                             <  1:901210/150‑1 (MQ=255)                                                                                                  tAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCg                                                      >  2:88398/1‑150 (MQ=255)                                                                                                  tAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTAGGTA‑CGGCCACCTTTATGGTGCGACCGATTTGGTGCTAGCGCGGCGGTCGGCGTCGTCTCCTTCCCAGCCTTCg                                                      >  1:23265/1‑150 (MQ=255)                                                                                                    ggATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGAt                                                    >  2:3038/1‑150 (MQ=255)                                                                                                     gATTTGTTCCCAGCAGTGCGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGCAAGCAGCTACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATc                                                   >  2:494916/1‑150 (MQ=255)                                                                                                     gATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATc                                                   <  2:230293/150‑1 (MQ=255)                                                                                                                       aGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTTGCCAGGCTTG‑CGTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTtc                                 >  2:1138351/1‑150 (MQ=255)                                                                                                                            gTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCgag                            >  2:1207166/1‑150 (MQ=255)                                                                                                                                  ttCAGGCATGAAAAACCCCGCcaaagcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgta                                                     >  1:853737‑M1/1‑21 (MQ=255)                                                                                                                                  ttCAGGCATGAAAAACCCCGCcaaagcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgta                                                     <  2:853737‑M1/120‑100 (MQ=255)                                                                                                                                  ttCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGGAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCttt                      <  2:23265/150‑1 (MQ=255)                                                                                                                                       gCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCttt                      >  2:1143985/1‑145 (MQ=255)                                                                                                                                       gCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCttt                      <  1:1143985/145‑1 (MQ=255)                                                                                                                                         aTGAAAAACCCCGCcaaagcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtc                                                                                        >  1:1080477‑M1/1‑14 (MQ=255)                                                                                                                                         aTGAAAAACCCCGCcaaagcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtc                                                                                        <  2:1080477‑M1/78‑65 (MQ=255)                                                                                                                                            aaaaaCCCCGCCAAAgcggggtttctcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgtacaaatcccgtcaacacccggttcatttccttactggcaac             <  2:452002‑M2/150‑136 (MQ=255)                                                                                                                                              aaaCCCCGCtttggcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgtacaaatcccgtcaacacccggttcatttccttactggcaaccc           >  1:791633‑M1/1‑9 (MQ=255)                                                                                                                                                cccccgCtttggcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgtacaaatcccgtcaacacccggttcatttccttactggcaacccgc         <  2:537189‑M1/149‑144 (MQ=255)                                                                                                                                                aCCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCTTTGTAGTTGGCAaaga        >  2:1056900/1‑150 (MQ=255)                                                                                                                                                  cccGCtttggcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagc                                                                >  1:659071‑M1/1‑5 (MQ=255)                                                                                                                                                  cccGCtttggcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagc                                                                <  2:659071‑M1/93‑89 (MQ=255)                                                                                                                                                  cccGCCAAAGCGGGGTTTCCCTGCAGTNGAAATCAGCC‑CTNGTAGGCNGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCTTTGTAGTTGGCAaagaag      >  1:750673/1‑150 (MQ=255)                                                                                                                                                  cccGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCTTTGTAGTTGGCAaagaag      >  1:1277175/1‑150 (MQ=255)                                                                                                                                                   ccGCtttggcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgtacaaatcccgtcaacacccggttcatttccttactggcaacccgccgc      >  1:209222‑M1/1‑4 (MQ=255)                                                                                                                                                   ccGCtttggcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgtacaaatcccgtcaacacccggttcatttccttact                   >  2:563578‑M1/1‑4 (MQ=255)                                                                                                                                                   ccGCtttggcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgtacaaatcccgtcaacacccggttcatttccttact                   <  1:563578‑M1/137‑134 (MQ=255)                                                                                                                                                    cGCtttggcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgtacaaatcccgtcaacacccggttcatttccttactggcaacccgccgct     <  1:230293‑M1/150‑148 (MQ=255)                                                                                                                                                      ccAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCTTTGTAGTTGGCAAAGAAGTGCt  <  1:1238925/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                       CGAGTGTAGCGGCGGGTTGCCAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCTTTGTAGTTGGCAAAGAAGTGCT  >  NC_002947/624915‑625213

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.