New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1556507	31 (0.630)	4 (0.080)	4/242	NT	11.8%	coding (369/852 nt)	purU‑II	formyltetrahydrofolate hydrolase
	?	NC_002947	= 1556530	30 (0.630)					coding (392/852 nt)	purU‑II	formyltetrahydrofolate hydrolase

TTCTCCATGACCTGGCGCATTACCGACTCGGCTCAGAAAAAACGCGTGGTATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCTTTGCCGAAGTGTCGCGCCTGGTGCAGGAGCATGCCGCCGACGTCGTGGTGCTGGCCCGCTACATGCA  >  NC_002947/1556358‑1556656                                                                                                                                                      |                                                                                                                                                      ttCTCCATTACCTGGCGCATTACCAGCTCGGCTCAGAAAAAACGCGTGGTATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCAC                                                                                                                                                       <  1:896326‑M1/150‑1 (MQ=255)      cATGACCTGGCGCATTACCGACTCGGCTCAGAAAAAACGCGTGGTATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGa                                                                                                                                                  >  1:559777/1‑150 (MQ=255)       aTGACCTGGCGCATTACCGACTCGGCTCAGAAAAAACGCGTGGTATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGAc                                                                                                                                                 <  2:559777/150‑1 (MQ=255)       aTGACCTGGCGCATTACCGACTCGGCTCAGAAAAAACGCGTGGTATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGAc                                                                                                                                                 >  1:284288/1‑150 (MQ=255)        tGACCTGGCGCATTACCGACTCGGCTCAGAAAAAACGCGTGGTATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGAcc                                                                                                                                                >  2:154978/1‑150 (MQ=255)              ggCGCATTACCGACTCGGCTCAGAAAAAACGCGTGGTATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCgca                                                                                                                                          <  1:880284/150‑1 (MQ=255)                         gACTCGGCTCAGAAAAAACGCGTGGTATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAg                                                                                                                               >  2:953071‑M2/1‑149 (MQ=255)                                cTCAGAAAAAACGCGTGGTATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACg                                                                                                                        <  2:284288/150‑1 (MQ=255)                                 tCAGAAAAAACGCGTGGCATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACtcgaccatgctgctcagggcgtggtggttgga                                                                                                                       >  2:852429‑M1/1‑118 (MQ=255)                                  cAGAAAAAACGCGTGGTATTGATGGCCAGCCGTGAGTCGCCCTGCCCGCCAGCTTTTCTCCACCGCTGGCACACCGATGCGCTGGACTGCGAGATCGCTTCCATTATTGCCAAGCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGt                                                                                                                      <  1:666005/150‑1 (MQ=255)                                     aaaaaaCGCGTGGTATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTAtt                                                                                                                   >  1:1193076/1‑150 (MQ=255)                                     aaaaaaCGCGTGGTATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTAtt                                                                                                                   <  1:154978/150‑1 (MQ=255)                                      aaaaaCGCGTGGTATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTc                                                                                                                  <  1:1237689/150‑1 (MQ=255)                                            gcgTGGTATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGttct                                                                                                            >  1:1153517/1‑150 (MQ=255)                                             cgTGGTATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGttctt                                                                                                           <  2:1153517/150‑1 (MQ=255)                                                 gTATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACtcgaccatgctgcgcaggtcgttgtggttggaa                                                                                                                      <  2:704603‑M1/135‑34 (MQ=255)                                                 gTATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACtcgaccatgctgcgcaggtcgttgtggttggaa                                                                                                                      >  1:704603‑M1/1‑102 (MQ=255)                                                          gCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTc                                                                                              <  2:937852/150‑1 (MQ=255)                                                          gCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATCGGGGAAACTGCGAGATCCCTTGCGTGATTTCCAACCACtcgaccatgctgcgcaggtcgttgtggttggaaatcacgcaagggatctcgcagtcc                                                                                              <  1:852429‑M1/150‑58 (MQ=255)                                                                     gTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCaaa                                                                                     >  1:774478/1‑148 (MQ=255)                                                                     gTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCaaa                                                                                     <  2:774478/148‑1 (MQ=255)                                                                              ccTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCgca                                                                                                                                          >  2:251914/1‑86 (MQ=255)                                                                              ccTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCgca                                                                                                                                          <  1:251914/86‑1 (MQ=255)                                                                                     gACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCttt                                                                   <  2:1193076/150‑1 (MQ=255)                                                                                     gACTTGCTGCACCGCTGGCACACCGATCAGCTGTCCGGTTTGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCttt                                                                   <  2:425437/150‑1 (MQ=255)                                                                                        ttGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAg                                                                                                                               <  2:625606‑M2/87‑2 (MQ=255)                                                                                        ttGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAg                                                                                                                               >  1:625606‑M2/1‑86 (MQ=255)                                                                                             gcACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGa                                                                                                                                                  <  1:431843/63‑1 (MQ=255)                                                                                             gcACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGa                                                                                                                                                  >  2:431843/1‑63 (MQ=255)                                                                                                    tGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCTTTGCCGAAGTGTCgcgc                                                    >  2:1202443/1‑150 (MQ=255)                                                                                                        acacCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATg                                                                                                                                     <  2:652907/65‑1 (MQ=255)                                                                                                        acacCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATg                                                                                                                                     >  1:652907/1‑65 (MQ=255)                                                                                                        acacCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCTTTGCCGAAGTGTCGCGCCTgg                                                >  1:1139/1‑150 (MQ=255)                                                                                                                   cTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCTTTGCCGAAGTGTCGCGCCTGGTGCAGGAGCAt                                     <  1:1202443/150‑1 (MQ=255)                                                                                                                     ggACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAgtggttggaaatcacgcaagggatctcgcagtttccccgatcggtgtgccagcggtgcagcaagtctgccaggcagtgcgactcacggctggc                                   <  1:852429‑M2/150‑94 (MQ=255)                                                                                                                            gagaTCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCTTTGCCGAAGTGTCGCGCCTGGTGCAGGAGCATGCCGCCGAc                            >  1:779793/1‑150 (MQ=255)                                                                                                                                  ccTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCTTTGCCGAAGTGTCGCGCCTGGTGCAGGAGCATGCCGCCGACGTCgtg                      >  1:335242/1‑150 (MQ=255)                                                                                                                                      gCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGGAACTTGAATTTCCGAAGTGTCGCGCCTGGTGCAGGAGCATGCCGCCGACGTCGTGGTGc                  <  2:1077824/150‑1 (MQ=255)                                                                                                                                       cGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCTTTGCCGAAGTGTCGCGCCTGGTGCAGGAGCATGCCGCCGACGTCGTGGTGCt                 >  1:377300/1‑150 (MQ=255)                                                                                                                                            tttCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTACGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCTTTGCCGAAGTGTCGCGCCTGGTGCAGGAGCATGCCGCCGACGTCGTGGTGCTGGccc            >  1:234281/1‑150 (MQ=255)                                                                                                                                             ttCCAACCACAACGACCTGCGCAGCATGGTCGAgtggttggaaatcacgcaagggatctcgcagtccagctcatcggtgtgccagcggtgcagcaagtctgccaggcagtgcgactcacggctggccatcaatac                          <  2:704603‑M2/135‑103 (MQ=255)                                                                                                                                             ttCCAACCACAACGACCTGCGCAGCATGGTCGAgtggttggaaatcacgcaagggatctcgcagtccagctcatcggtgtgccagcggtgcagcaagtctgccaggcagtgcgactcacggctggccatcaatac                          >  1:704603‑M2/1‑33 (MQ=255)                                                                                                                                              tCCAACCACCACGCCCTGAGCAGCATGGTCGAgtggttggaaatcacgcaagggatctcgcagtccagctcatcggtgtgccagcggtgcagcaagtctgccaggcagtgcgactcacggctggccatcaatgccacgcgttttttctga          >  2:852429‑M2/1‑32 (MQ=255)                                                                                                                                                cAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCTTTGCCGAAGTGTCGCGCCTGGTGCAGGAGCATGCCGCCGACGTCGTGGTGCTGGCCCGCTa        >  1:1064193/1‑150 (MQ=255)                                                                                                                                                 aaCCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCTTTGCCGAAGTGTCGCGCCTGGTGCAGGAGCATGCCGCCGACGTCGTGGTGCTGGCCCGCTAc       >  1:9351/1‑150 (MQ=255)                                                                                                                                                 aaCCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCTTTGCCGAAGTGTCGCGCCTGGTGCAGGAGCATGCCGCCGACGTCGTGGTGCTGGCCCGCTAc       >  1:632571/1‑150 (MQ=255)                                                                                                                                                   ccACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCAAAAGACAAGGCCCCGGCCTTTGCCGAAGTGTCCCGCGGGGTGCAGGAGCATGCCGCCGACGTCGTGGTGCTGGCCCGCTACAt     >  1:781312/1‑150 (MQ=255)                                                                                                                                                   ccACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCAGGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCTTTGCCGAAGTGTCGCGCCTGGTGCAGGAGCACGCCGCCGACGTCGGGGTGCTGGCCCGCTACAt     >  2:385863/1‑150 (MQ=255)                                                                                                                                                     acaACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCTTTGCCGAAGTGTCGCGCCTGGTGCAGGAGCATGCCGCCGACGTCGTGGTGCTGGCCCGCTACATGc   <  2:1139/150‑1 (MQ=255)                                                                                                                                                     acaACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCTTTGCCGAAGTGTCGCGCCTGGTGCAGGAGCATGCCGCCGACGTCGTGGTGCTGGCCCGCTACATGc   >  2:885163/1‑150 (MQ=255)                                                                                                                                                      ctcgaccatgctgcgcaggtcgttgtggttggaaatcacgcaagggatctcgcagtccagctcatcggtgtgccagcggtgcagcaagtctgccaggcagtgcgactcacggctggccatcaataccacgcgttttttctgagccgagtc  >  2:953071‑M1/1‑1 (MQ=255)                                                                                                                                                      ctcgaccatgctgcgcaggtcgttgtggttggaaatcacgcaagggatctcgcagtccagctcatcggtgtgccagcggtgcagcaa                                                                 <  2:625606‑M1/87‑87 (MQ=255)                                                                                                                                                      ctcgaccatgctgcgcaggtcgttgtggttggaaatcacgcaagggatctcgcagtccagctcatcggtgtgccagcggtgcagcaa                                                                 >  1:625606‑M1/1‑1 (MQ=255)                                                                                                                                                      caACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCTTTGCCGAAGTGTCGCGCCTGGTGCAGGAGCATGCCGCCGACGTCGTGGTGCTGGCCCGCTACATGCa  <  2:234281/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      TTCTCCATGACCTGGCGCATTACCGACTCGGCTCAGAAAAAACGCGTGGTATTGATGGCCAGCCGTGAGTCGCACTGCCTGGCAGACTTGCTGCACCGCTGGCACACCGATGAGCTGGACTGCGAGATCCCTTGCGTGATTTCCAACCACAACGACCTGCGCAGCATGGTCGAGTGGCACGGTATTCCGTTCTTCCATGTACCGGTCGACCCCAAAGACAAGGCCCCGGCCTTTGCCGAAGTGTCGCGCCTGGTGCAGGAGCATGCCGCCGACGTCGTGGTGCTGGCCCGCTACATGCA  >  NC_002947/1556358‑1556656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.