| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2258188 = | 28 (0.570) | 10 (0.210) | 5/246 | NT | 26.6% | intergenic (+200/‑192) | PP_1990/asd | transposase/aspartate‑semialdehyde dehydrogenase |
| ? | NC_002947 | = 4908127 | NA (NA) | intergenic (‑58/‑224) | PP_4317/PP_4318 | hypothetical protein/transposase | |||||
AACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAA > NC_002947/2258039‑2258331 | tcttgatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggag < 2:999316‑M1/1‑1 (MQ=255)tcttgatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggcagaacgcaggccttgtggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggag > 1:455401‑M1/150‑150 (MQ=255) ttgatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCa > 1:1000481‑M1/148‑150 (MQ=255) tgatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCaa < 2:837831‑M1/4‑1 (MQ=255) tcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGc < 1:450977‑M1/7‑1 (MQ=255) gcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGc < 2:1240894‑M1/2‑1 (MQ=255) gcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGc > 1:1240894‑M1/109‑110 (MQ=255) aacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaag < 2:321090‑M1/59‑1 (MQ=255) ggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagat < 2:58498‑M1/73‑1 (MQ=255) gaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCaa > 2:1162350‑M1/77‑80 (MQ=255) gaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCaa < 1:1162350‑M1/4‑1 (MQ=255) ggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAgatcaagatcaagatcaagatcaagatcaagatcaagatcaa > 1:321090‑M1/75‑150 (MQ=255) gCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCACAGAGATTGACGTGTATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaaca < 1:1048782/150‑1 (MQ=11) gACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagcaa > 1:135890/1‑150 (MQ=34) tgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgcctccGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaaga < 2:848048‑M1/42‑1 (MQ=255) tgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgcctccGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaaga > 1:848048‑M1/68‑109 (MQ=255) gacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGCCTGCGTTCGGCCTCCTGAAGtcgcgaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatcaac > 1:58498‑M1/68‑143 (MQ=255) ggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgcctccGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCgaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagat > 2:328540‑M1/58‑133 (MQ=255) ggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgcctccGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCgaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagat < 1:328540‑M1/79‑4 (MQ=255) ggCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAcagcaacagcaacagcaa > 2:1117489/1‑150 (MQ=40) ccccATCCTGGGGCCTCAGCGATTGACGGGCATCAATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATAAAGATCAAGATAAAGATCAACAGCAACAGCAACAGCAATa > 2:264665/1‑150 (MQ=255) tCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTAc < 1:819852/150‑1 (MQ=255) cTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAg > 2:910469/1‑150 (MQ=255) tGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGc > 1:834086/1‑150 (MQ=255) gCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATa > 2:384433/1‑150 (MQ=255) ccgcAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAg < 2:1021466/147‑1 (MQ=255) ccTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAg < 1:1117489/150‑1 (MQ=255) ccTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAg > 2:221624/1‑150 (MQ=255) cgcTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACg < 2:1260397/150‑1 (MQ=255) gcTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAAt > 1:683663/1‑141 (MQ=255) gcTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAAt < 2:683663/141‑1 (MQ=255) gcTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGc > 2:1060389/1‑150 (MQ=255) gcTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGc > 2:229082/1‑150 (MQ=255) gatggggccttcggcgcggtcctgccgggaGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAg > 2:182168‑M1/31‑139 (MQ=255) gatggggccttcggcgcggtcctgccgggaGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAg < 1:182168‑M1/109‑1 (MQ=255) cGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCaa < 2:1001521/134‑1 (MQ=255) cGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCaa > 1:1001521/1‑134 (MQ=255) gggCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGa > 2:351149/1‑150 (MQ=255) ggCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAg < 1:910469/150‑1 (MQ=255) aTCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGca > 1:502594/1‑150 (MQ=255) ccATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGcaca < 1:503804/150‑1 (MQ=255) cGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACaaaa < 2:502594/150‑1 (MQ=255) cACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTa > 1:216002/1‑111 (MQ=255) cACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGCCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTa < 2:216002/111‑1 (MQ=255) cTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTggg < 1:812335/128‑1 (MQ=255) cTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTggg > 2:812335/1‑128 (MQ=255) gCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACaa < 1:229082/150‑1 (MQ=255) | AACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAA > NC_002947/2258039‑2258331 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |