| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2414792 | 27 (0.550) | 9 (0.190) | 9/242 | NT | 25.6% | intergenic (+291/‑54) | PP_2114/PP_2115 | transposase/hypothetical protein |
| ? | NC_002947 | = 2414836 | NA (NA) | intergenic (+335/‑10) | PP_2114/PP_2115 | transposase/hypothetical protein | |||||
ATTCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAG > NC_002947/2414643‑2414941 | aTTCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCG > 1:317793‑M1/1‑150 (MQ=255) ttCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCgg > 1:657858/1‑150 (MQ=38) gATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGa < 1:555638/150‑1 (MQ=35) aTGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGAc > 1:830117/1‑150 (MQ=35) gCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACcgc < 1:1084227/150‑1 (MQ=34) tGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAg > 1:365264/1‑150 (MQ=32) cTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGcc < 1:770777/150‑1 (MQ=32) aCCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCTGCAGGACCACGCCAAAGGgcccc > 2:950077/1‑149 (MQ=255) ttttCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATcc < 2:731197/150‑1 (MQ=32) ttACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGtcaagcgctgaggccccaggatggggccttcggcg > 1:253849‑M1/1‑115 (MQ=255) gAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGtcaagcgctgag < 2:727811‑M1/120‑13 (MQ=255) gAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGtcaagcgctgag > 1:727811‑M1/1‑108 (MQ=255) tttGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggagc < 1:281602‑M1/150‑52 (MQ=255) tttGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggagc > 2:51166‑M1/1‑99 (MQ=255) ttGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggagca < 1:51166‑M1/150‑53 (MQ=255) cAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggagcaaggc < 2:253849‑M1/150‑57 (MQ=255) aaaaaGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggag > 2:18483‑M1/1‑84 (MQ=255) aaaaaGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggag < 1:18483‑M1/134‑51 (MQ=255) cAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCaa > 2:1279402/1‑150 (MQ=32) tGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTg > 2:298909/1‑146 (MQ=32) tGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTg < 1:298909/146‑1 (MQ=32) gcgcTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGTAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTc < 2:826500/150‑1 (MQ=17) ccATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGcctc > 2:1024078/1‑150 (MQ=32) tcatcCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTg > 2:1047920/1‑150 (MQ=32) atcCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGaa > 2:758756/1‑150 (MQ=32) ccTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaa < 1:1047920/150‑1 (MQ=32) ccTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaa < 1:1095962/150‑1 (MQ=32) ccTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaa < 1:1255939/150‑1 (MQ=32) ccTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGAGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGACGTCGCGaa > 2:576993/1‑150 (MQ=17) cgctgcgctCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatc < 2:317793/150‑1 (MQ=32) ctgcgctCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaa < 1:1148451/150‑1 (MQ=32) tgcgctCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaag < 2:301175/150‑1 (MQ=32) cccTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATGCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagat > 2:368961/1‑150 (MQ=17) cTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAACGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatca > 1:1038251/1‑150 (MQ=17) cTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagat < 2:365264/150‑1 (MQ=32) ccGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatca > 1:288808/1‑150 (MQ=32) cGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaa < 1:758756/150‑1 (MQ=32) gCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaaga > 2:413911/1‑150 (MQ=32) tCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagat > 1:739605/1‑150 (MQ=32) tCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCGTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagat > 2:1210715/1‑150 (MQ=17) ccGtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggagcaaggccggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagt > 1:773178‑M1/1‑3 (MQ=255) ccGtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggagcaaggccggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggtta > 2:691117‑M1/1‑3 (MQ=255) ccGtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggagcaaggccggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggtta < 1:691117‑M1/125‑123 (MQ=255) cGtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggagcaaggccggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgccgtgtttgaaaataagtg > 2:713407‑M1/1‑2 (MQ=255) gtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggagcaaggccggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtga < 2:983617‑M1/150‑150 (MQ=255) gtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggagcaaggccggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtga < 2:755658‑M1/150‑150 (MQ=255) gtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggagcaaggccggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtga < 1:86853‑M1/150‑150 (MQ=255) gtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggagcaaggccggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtga > 1:755658‑M1/1‑1 (MQ=255) | ATTCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAG > NC_002947/2414643‑2414941 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |