New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2623058 =	37 (0.750)	4 (0.080)	4/244	NT	11.9%	coding (184/333 nt)	PP_5517	hypothetical protein
	?	NC_002947	2623092 =	23 (0.480)					coding (218/333 nt)	PP_5517	hypothetical protein

TGCTGTAGCGCTCACCCTCCCTTCTGGTGCTTGGGCGCAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGATGCGTGTGGAGGTGTTCCAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGA  >  NC_002947/2622910‑2623207                                                                                                                                                     |                                                                                                                                                      gccccttgaggtgtgattgcgtatgacttgcgtcagcgcttcctcacgaacttggtgtaggtgtagaaggctcgaccactcggagaaaggaaggtgaccgcgtactcattctgttggaacacctccacacgcatccccgaactgacgtgg                                                                                                                                                      <  1:233543‑M1/2‑1 (MQ=255)    tGTAGCGCTCACCCTCCCTTCTGGTGCTTGGGCGCAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGgcgc                                                                                                                                                   >  1:1110853/1‑150 (MQ=255)              aCCCTCCCTTCTGGTGCTTGGGCGCAATTGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCtt                                                                                                                                         >  1:1136817/1‑150 (MQ=255)              aCCCTCCCTTCTGGTGCTTGGGCGCAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCtt                                                                                                                                         >  1:1078330/1‑150 (MQ=255)                cctccctTCTGGTGCTTGGGCGCAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTtgt                                                                                                                                       >  1:1025278/1‑150 (MQ=255)                 ctccctTCTGGTGCTTGGGCGCAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTtgtg                                                                                                                                      >  1:909628/1‑150 (MQ=255)                 ctccctTCTGGTGCTTGGGCGCAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTtgtg                                                                                                                                      >  1:613280/1‑150 (MQ=255)                    cctTCTGGTGCTTGGGCGCAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTtgt                                                                                                                                       <  2:629878/146‑1 (MQ=255)                    cctTCTGGTGCTTGGGCGCAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTtgt                                                                                                                                       >  1:629878/1‑146 (MQ=255)                      ttCTGGTGCTTGGGCGCAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCgg                                                                                                                                                       <  2:1084470/128‑1 (MQ=255)                      ttCTGGTGCTTGGGCGCAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCgg                                                                                                                                                       >  1:1084470/1‑128 (MQ=255)                        cTGGTCCTTGGGCGCAATTTCTAGACGTAAGTTACAACGGCCTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGCGCCGTTGCCCAGGACGGCGATCAAGCGCGCGCTGACCGGCTTCTGAGCCAgg                                                                                                                               <  2:604471/150‑1 (MQ=255)                             gattGGGCGCAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGc                                                                                                                          <  1:735408/148‑1 (MQ=255)                              cTTGGGCGCAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCt                                                                                                                         <  2:48622/150‑1 (MQ=255)                              cTTGGGCGCAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCt                                                                                                                         <  1:803279/150‑1 (MQ=255)                               ttGGGCGCAATGGCGAGACGTAAGTTACAACGGCGTAATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTg                                                                                                                        >  1:272182/1‑150 (MQ=255)                                  ggCGCAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCa                                                                                                                     <  1:49980/150‑1 (MQ=255)                                   gcgcAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCAc                                                                                                                    <  2:566552/150‑1 (MQ=255)                                   gcgcAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCAc                                                                                                                    <  1:153728/150‑1 (MQ=255)                                   gcgcAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCAc                                                                                                                    <  2:1025278/150‑1 (MQ=255)                                             gagaCGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCt                                                                                                                         <  1:448105/135‑1 (MQ=255)                                             gagaCGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCt                                                                                                                         >  2:448105/1‑135 (MQ=255)                                                 cGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAg                                                                                                                                    >  2:935783/1‑120 (MQ=255)                                                 cGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAg                                                                                                                                    <  1:935783/120‑1 (MQ=255)                                                 cGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGAt                                                                                                      >  1:791781/1‑150 (MQ=255)                                                           aaCGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGATGCGTGTGGAg                                                                                            <  1:1075402/150‑1 (MQ=255)                                                             cGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGATGCGTGTGGAGgt                                                                                          <  2:613280/150‑1 (MQ=255)                                                              ggCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGAAGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGATGCGTGTGGAGgtg                                                                                         >  2:744764/1‑150 (MQ=255)                                                                     ttCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGATGCGTGTGGAGGTGTTCCAAc                                                                                  >  2:1072522/1‑150 (MQ=255)                                                                      tCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGATGCGTGTGGAGGTGTTCCAACa                                                                                 <  2:1099447/150‑1 (MQ=255)                                                                      tCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGATGCGTGTGGAGGTGTTCCAACa                                                                                 <  1:744764/150‑1 (MQ=255)                                                                         cGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGATGCGTGTGGAGGTGTTCCAACAGaa                                                                              <  2:1136817/150‑1 (MQ=255)                                                                            aGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGGTCGGGGATGCGTGTGGAGGTGTTCCAACAGAATGa                                                                           <  2:1110853/150‑1 (MQ=255)                                                                              actcggagaaaggaaggtgaccgcgtactcattctgttggaacacctccacacgcatccccgaactgacgtGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGt                                                                                                                  >  1:793556‑M1/72‑109 (MQ=255)                                                                              actcggagaaaggaaggtgaccgcgtactcattctgttggaacacctccacacgcatccccgaactgacgtGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGt                                                                                                                  <  2:793556‑M1/38‑1 (MQ=255)                                                                                   gTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGATGCGTGTGGAGGTGTTCCAACAGAATGAGTAcgcg                                                                    <  2:909628/150‑1 (MQ=255)                                                                                     gaaaggaaggtgaccgcgtactcattctgttggaacacctccacacgcatccccgaactgacgtGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCa                                                                                                                >  1:95229‑M1/65‑104 (MQ=255)                                                                                     gaaaggaaggtgaccgcgtactcattctgttggaacacctccacacgcatccccgaactgacgtGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCa                                                                                                                <  2:95229‑M1/40‑1 (MQ=255)                                                                                            aacaaGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGATGCGTGTGGAGGTGTTCCAACAGAATGAGTACGCGGTCAccttc                                                           <  1:677289/150‑1 (MQ=255)                                                                                             acaaGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGATGCGTGTGGAGGTGTTCCAACAGAATGAGTACGCGGTCAccttcc                                                          >  1:152980/1‑150 (MQ=255)                                                                                                      gCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGATGCGTGTGGAGGTGTTCCAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGa                                                 <  1:1072522/150‑1 (MQ=255)                                                                                                                      cGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGATGCGTGTGGAGGTGTTCCAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGTCGAGCCTTcta                                 <  2:829022/150‑1 (MQ=255)                                                                                                                             gTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGATGCGTGTGGAGGTGTTCCAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGTTGAGCCTTctacacctac                          <  2:272182/150‑1 (MQ=255)                                                                                                                                      gACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGATGCGTGTGGAGGTGTTCCAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTc                 <  2:152980/150‑1 (MQ=255)                                                                                                                                          gCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTAGGGGATGCGTGTGGAGGTGTTCCAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGa             <  2:1078330/150‑1 (MQ=255)                                                                                                                                                     GGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGATGCGTGTGGAGGTGTTCCAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGa  >  2:791781‑M1/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      TGCTGTAGCGCTCACCCTCCCTTCTGGTGCTTGGGCGCAATGGCGAGACGTAAGTTACAACGGCGTCATTCCCGCAGACTATGTTTACTGCAACAAGCAGAGCGACCTTGACGCGTTCGGGGCCGTTGCCCAGGACGGCGATCAAGCGGGCGCTGACCGGCTTGTGAGCCAGGGTCGCTGCCACGTCAGTTCGGGGATGCGTGTGGAGGTGTTCCAACAGAATGAGTACGCGGTCACCTTCCTTTCTCCGAGTGGTCGAGCCTTCTACACCTACACCAAGTTCGTGAGGAAGCGCTGA  >  NC_002947/2622910‑2623207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.