| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4625972 = | NA (NA) | 2 (0.060) +CGACCGCTGTACTCCACCAACCCCATTGCATTTGCCGC |
4/174 | NT | 4.8% | intergenic (+4519/+45) | PP_5654/PP_4091 | phosphotriesterase/transposase |
| ? | NC_002947 | 5401729 = | 57 (1.160) | intergenic (+1057/+111) | PP_4743/PP_4745 | hypothetical protein/transposase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCAGCGACAACCTGATTGCCGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAGCCACGT > NC_002947/4625823‑4626118 | ccAGCGACAACCTGATTGCCGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACg > 2:971494/1‑150 (MQ=255) cTGATTGCCGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCa > 2:900155/1‑150 (MQ=255) cTGATTGCCGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCa > 2:735783/1‑150 (MQ=255) aTTGCCGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGa < 1:60699/150‑1 (MQ=255) gCCGAGGTACTCACCCAGACGCAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAACCCCTCAAAAGCAGAGCATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAAcc < 1:1186069/150‑1 (MQ=14) ccGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAAccc > 1:367518/1‑150 (MQ=255) cGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAAcccc > 1:955306/1‑150 (MQ=255) cGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAAcccc > 1:118930/1‑150 (MQ=255) gAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCa < 1:900155/150‑1 (MQ=255) ccAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTaa > 2:455000/1‑122 (MQ=255) ccAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTaa < 1:455000/122‑1 (MQ=255) ccAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGCTCCATGAACCCCACCTACCACAAg > 2:204864/1‑150 (MQ=255) ccAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACGCCACCTGCCACAAg < 2:955306/150‑1 (MQ=255) cAAACACAGCGCCGAGGGATGTACAACGCCGCAACGGGCGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCAACCCCACGCGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTCCCACAAgg < 2:942216/150‑1 (MQ=18) acaGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGaa < 2:1262810/150‑1 (MQ=255) caGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAg < 2:1082034/150‑1 (MQ=255) gcgcCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCACCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAg > 1:445557/1‑141 (MQ=255) gcgcCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCAACGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAg < 2:445557/141‑1 (MQ=255) cAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGt < 1:332836/128‑1 (MQ=255) cAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGt > 2:332836/1‑128 (MQ=255) cctccAATGACGAAAACGCGAACCCCGAGAAGATCATCGGTCGCTGCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCCCAAGGTGGAAGCCAAAGTTACCGTGGCATctct < 1:547844/147‑1 (MQ=25) gccAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTaa > 1:101480/1‑91 (MQ=39) gccAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTaa < 2:101480/91‑1 (MQ=39) cGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGt > 1:174880/1‑150 (MQ=255) gAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCt > 1:662258/1‑102 (MQ=255) gAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCt < 2:662258/102‑1 (MQ=255) gAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTg < 1:630538/131‑1 (MQ=255) gAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTg > 2:630538/1‑131 (MQ=255) aaaCGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTAc > 2:242309/1‑102 (MQ=255) aaaCGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTAc < 1:242309/102‑1 (MQ=255) gCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCCTTCGCTGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATgg > 1:1043178/1‑150 (MQ=255) tCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCagcagc < 2:78192/150‑1 (MQ=255) tCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCagcagc < 2:174880/150‑1 (MQ=255) gagaaGATCATCGGTGGCTTCCTTGAACTACAACACAAGGGCAAGACCTATTTGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAgcgc > 2:137508/4‑150 (MQ=18) catcGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGtt < 1:42753/127‑1 (MQ=255) catcGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGtt > 2:42753/1‑127 (MQ=255) cGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAg > 2:517525/1‑97 (MQ=255) cGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAg < 1:517525/97‑1 (MQ=255) cGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGCTCCATGAACCCCACCTCCCACCAGGTGGAAGCCAAAGTTACCGTCGCATCTCTGGCGAACAGTTCCATGGCCGCAGCGCTTCGTAGTCTGCTAc < 2:367518/150‑1 (MQ=21) cGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCATCGTAGTCTTCTAc < 2:118930/150‑1 (MQ=255) ttCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGa < 1:971494/150‑1 (MQ=255) cTTGACCTACCCCACACGGGCAAGACCTATTCGGGACGCAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGa > 1:4526/1‑150 (MQ=255) cTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGa > 1:372488/1‑150 (MQ=255) gACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGc > 2:399821/1‑150 (MQ=255) ccTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATg > 2:1178589/1‑114 (MQ=255) ccTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATg < 1:1178589/114‑1 (MQ=255) cTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTg > 2:1052229/1‑150 (MQ=255) cTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTg > 2:367676/1‑150 (MQ=255) aCCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCg > 2:826163/1‑150 (MQ=255) cccACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGaa > 1:743335/1‑70 (MQ=255) cccACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGaa < 2:743335/70‑1 (MQ=255) ccACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAg > 1:507473/1‑140 (MQ=255) ccACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAg < 2:507473/140‑1 (MQ=255) ccACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCa < 2:1043178/150‑1 (MQ=255) ccACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCa < 1:826163/150‑1 (MQ=255) cacaCGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGa < 1:563428/67‑1 (MQ=255) cacaCGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGa > 2:563428/1‑67 (MQ=255) acacGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGt > 2:879223/1‑150 (MQ=255) acacGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGt < 1:216120/150‑1 (MQ=255) gggCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTAACACAAGGTGGAAGCCAAAGTTACCGTGACATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCt < 1:1215268/150‑1 (MQ=255) aGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAgg > 2:895753/1‑150 (MQ=255) aGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAgg > 1:1201769/1‑150 (MQ=255) aTTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTgg < 1:367676/150‑1 (MQ=40) ggACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAg > 2:1012151/1‑150 (MQ=37) acaACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAGCCAc > 2:127464/1‑150 (MQ=33) caACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCaaa > 2:1084756/1‑48 (MQ=40) caACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCaaa < 1:1084756/48‑1 (MQ=40) aaCGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAGCCACGt > 1:637152/1‑150 (MQ=32) | CCAGCGACAACCTGATTGCCGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAGCCACGT > NC_002947/4625823‑4626118 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |