New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	922749 =	48 (0.980)	3 (0.060)	4/248	NT	6.3%	coding (282/1185 nt)	PP_0803	protein secretion ABC transporter permease
	?	NC_002947	922788 =	42 (0.860)					coding (243/1185 nt)	PP_0803	protein secretion ABC transporter permease

CGGGAAGGTCAGTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGATACCTCGGTCACCTCGAACCAGGCCGCCCAGGCCAGGAACGCCGCCAGCAT  >  NC_002947/922641‑922937                                                                                                                                                    |                                                                                                                                                      cGGGAAGGTCAGTGGCTTGCCGGTCACCTCTGCCTCCAGGAGGGTTAGTGCCGCCCTGGCGGCTCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTc                                                                                                                                                     <  1:1249990/150‑1 (MQ=255)         tCAGTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCgg                                                                                                                                             <  1:523649/150‑1 (MQ=255)         tCAGTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGAAATCTTCGTGGGCCTGCCCTGGGCTAGCACCTGGCCGCGCTCGACCAGGTCACCTTCgg                                                                                                                                             >  1:926611/1‑150 (MQ=255)          tccaccggcacaggcaaggtcattccaagttcgcgagagcaggtcattcagtcgttcgagggcggtatcgtcgcgcagatgagcgtggccgaaggtgaccgggtcgagctgggccagcacctggccgcgctcgaccagGTCACCTTc                                                                                                                                               <  1:1078233‑M2/9‑1 (MQ=255)          tccaccggcacaggcaaggtcattccaagttcgcgagagcaggtcattcagtcgttcgagggcggtatcgtcgcgcagatgagcgtggccgaaggtgaccgggtcgagctgggccagcacctggccgcgctcgaccagGTCACCTTc                                                                                                                                               >  2:1078233‑M2/139‑147 (MQ=255)            gTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCCCGCTATTAGGCCTCGCTGTGTTGGATGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCa                                                                                                                                          >  1:1120539/1‑150 (MQ=255)             accggcacaggcaaggtcattccaagttcgcgagagcaggtcattcagtcgttcgagggcggtatcgtcgcgcagatgagcgtggccgaaggtgaccgggtcgagctgggccagcacctggccgcgctcgaccagGt                                                                                                                                                      <  2:878958‑M2/2‑1 (MQ=255)             accggcacaggcaaggtcattccaagttcgcgagagcaggtcattcagtcgttcgagggcggtatcgtcgcgcagatgagcgtggccgaaggtgacCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGt                                                                                                                                                      <  1:878958‑M1/41‑1 (MQ=255)               gCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGc                                                                                                                                       >  2:806573/1‑150 (MQ=255)                            ctctGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGcgac                                                                                                                          >  1:289975/1‑150 (MQ=255)                            ctctGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTAGACCAGGTCACCTTCGGCCACGCTCATCTGCGcgac                                                                                                                          >  1:500708/1‑150 (MQ=255)                             tctGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGcgacg                                                                                                                         >  2:560816/1‑150 (MQ=255)                               tgcctgcAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGAt                                                                                                                       <  2:342448/150‑1 (MQ=255)                                 cctgcAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCAc                                                                                                                                                   >  1:1280540/1‑120 (MQ=255)                                 cctgcAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCAc                                                                                                                                                   <  2:1280540/120‑1 (MQ=255)                                  ctgcAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGAGGGTAcc                                                                                                                    >  1:512282/1‑150 (MQ=255)                                                ggctggcCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACt                                                                                                      <  2:289975/150‑1 (MQ=255)                                                                gcgGTACTTGGCCTCGCTTTCACCCACGCTGTAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTcg                                                                                      <  1:216024/150‑1 (MQ=255)                                                                 cgGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTAGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTcgc                                                                                     <  2:500708/150‑1 (MQ=255)                                                                        tGGCCTCGTTTTCACCCACGCTGGAAGCCGTCTTGTTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGACCTCGAACGACTGAATGACCTGCTCTCGCGAACTTg                                                                              <  1:387409/150‑1 (MQ=255)                                                                        tGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATATCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTg                                                                              <  2:905547/150‑1 (MQ=255)                                                                          gCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTc                                                                                                              <  2:115760/116‑1 (MQ=255)                                                                          gCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTc                                                                                                              >  1:115760/1‑116 (MQ=255)                                                                           ccTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGaa                                                                           <  1:806573/150‑1 (MQ=255)                                                                            cTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAAt                                                                          >  1:496221/1‑150 (MQ=255)                                                                            cTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTAGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAAt                                                                          <  2:926611/150‑1 (MQ=255)                                                                                cTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGAcc                                                                      <  1:275871/150‑1 (MQ=255)                                                                                cTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGAcc                                                                      <  2:1256184/150‑1 (MQ=255)                                                                                     aCCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAAc                                                                                                          <  1:296607/109‑1 (MQ=255)                                                                                     aCCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAAc                                                                                                          >  2:296607/1‑109 (MQ=255)                                                                                     aCCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGcc                                                                 >  2:1223906/1‑150 (MQ=255)                                                                                      cccACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCt                                                                <  2:1263825/150‑1 (MQ=255)                                                                                       ccACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCtg                                                               >  2:705401/1‑150 (MQ=255)                                                                                        cACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGaa                                                                                  <  1:783386/130‑1 (MQ=255)                                                                                        cACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGaa                                                                                  >  2:783386/1‑130 (MQ=255)                                                                                         aCGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCtgtg                                                             >  2:811603/1‑150 (MQ=255)                                                                                               gAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTg                                                       <  1:1223906/150‑1 (MQ=255)                                                                                                   ccGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACtt                                                                               <  1:706476/122‑1 (MQ=255)                                                                                                   ccGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACtt                                                                               >  2:706476/1‑122 (MQ=255)                                                                                                    gaaggtgacCTGGTCGAGCGCGGCCAGGTGCTGGCCCAGCTCGACCCGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGa                                                     <  1:1078233‑M1/138‑1 (MQ=255)                                                                                                    gaaggtgacCTGGTCGAGCGCGGCCAGGTGCTGGCCCAGCTCGACCCGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGa                                                     >  2:1078233‑M1/10‑147 (MQ=255)                                                                                                        ttGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGATACCTCg                                              >  2:186722/1‑150 (MQ=255)                                                                                                        ctGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCCCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGATACCTCg                                              <  1:182022/149‑1 (MQ=255)                                                                                                           acctggtcgagcgcggccaggtgctggcccagctcgacccgGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGt                                                        <  1:878958‑M2/96‑1 (MQ=255)                                                                                                           acCTGGTCGAGCGCGGCCAGGTGCTGGCCCAGCTCGACCCGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGt                                                        <  2:878958‑M1/135‑1 (MQ=255)                                                                                                              gggtcgAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGATACCTCGGTCAcc                                        <  1:705401/150‑1 (MQ=255)                                                                                                              gggtcgAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGATACCTCGGTCAcc                                        <  1:560816/150‑1 (MQ=255)                                                                                                                          gCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGATACCTCGGTCACCTCGAACCAGgcc                            >  2:1155970/1‑150 (MQ=255)                                                                                                                           ccAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGc                                                                  <  2:668489/111‑1 (MQ=255)                                                                                                                           ccAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGc                                                                  >  1:668489/1‑111 (MQ=255)                                                                                                                                aCCTGGTCGAGCGCGGCCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTCGCCTGTGCCGGCGGATACCACGGTCACCTCGAACCAGGCCGCcgag                      >  2:220988/1‑150 (MQ=255)                                                                                                                                  cTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGATACCTCGGTCACCTCGAACCAGGCCGCccaggc                    >  2:60748/1‑150 (MQ=255)                                                                                                                                            tCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGATACCTCGGTCACCTCGAACCAGGCCGCCCAGGCCAGGAAcgcc          >  1:379731/1‑150 (MQ=255)                                                                                                                                                ccAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGATACCTCGGTCACCTCGAACCAGGCCGCCCAGGCCAGGAACGCCGCCa      <  1:1155970/150‑1 (MQ=255)                                                                                                                                                  aGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGc                                                                  <  2:966434/88‑1 (MQ=255)                                                                                                                                                  aGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGc                                                                  >  1:966434/1‑88 (MQ=255)                                                                                                                                                    gTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGATACCTCGGTCACCTCGAACCAGGCCGCCCAGGCCAGGAACGCCGCCAGcgt  >  2:109674/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CGGGAAGGTCAGTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGATACCTCGGTCACCTCGAACCAGGCCGCCCAGGCCAGGAACGCCGCCAGCAT  >  NC_002947/922641‑922937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.