New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 109670052 (1.060)4 (0.080) 4/240 NT 7.3% coding (267/726 nt) lptB ABC transporter ATP‑binding protein
?NC_002947 = 1096707 51 (1.080)coding (260/726 nt) lptB ABC transporter ATP‑binding protein

CCGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGACCAGCCCGACAATCATGTAGAAGCAAGTGGTCTTGCCGGCGCCGT  >  NC_002947/1096563‑1096854
                                                                                                                                                 |                                                                                                                                                   
ccGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGcttcc                                                                                                                                                <  1:676640‑M2/150‑6 (MQ=255)
 cGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCt                                                                                                                                               >  1:770908/1‑150 (MQ=255)
   aGGTTGTCCCGGCTGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTGGCGGAAGATCGAGGCTTCCTGc                                                                                                                                             >  2:422175/1‑150 (MQ=255)
         tCCTGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGAGGTCTTCCCGATCGAGGTCGTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAgg                                                                                                                                       >  1:158005/1‑150 (MQ=255)
           ccGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTa                                                                                                                                     >  2:751581/1‑150 (MQ=255)
                    gCTGATGTGTAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTcc                                                                                                                            >  2:97420/1‑150 (MQ=255)
                    gCTGATGTGTAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTcc                                                                                                                            >  2:97426/1‑150 (MQ=255)
                           tgGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACgg                                                                                                                     >  1:778075/1‑150 (MQ=255)
                             gAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGCCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTTCGGCAGGTAGCCGATTCCGGCACGGgc                                                                                                                   <  2:505374/150‑1 (MQ=255)
                                 tCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCAGTAGGTCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCgg                                                                                                               >  1:402874/1‑150 (MQ=255)
                                    tGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCg                                                                                                            >  2:413106/1‑150 (MQ=255)
                                           ggCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATgg                                                                                                     >  2:29744/1‑150 (MQ=255)
                                              tttCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGTCGATTCCGGGAAGTGCGCGGCCGTGCAGGGGCt                                                                                                  >  1:283328/1‑150 (MQ=255)
                                              tttCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGGGCGGCCGTGCATGGGcg                                                                                                  >  1:472063/1‑149 (MQ=255)
                                              tttCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCt                                                                                                  >  1:497376/1‑150 (MQ=255)
                                                 ccAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCtggt                                                                                               <  1:413106/150‑1 (MQ=255)
                                                 ccAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCtggt                                                                                               <  2:676640/150‑1 (MQ=255)
                                                    gCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGc                                                                                            >  2:1085561/1‑150 (MQ=255)
                                                        tttGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGAc                                                                                        >  1:242117/1‑150 (MQ=255)
                                                        tttGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGAc                                                                                        >  2:829775/1‑150 (MQ=255)
                                                              gcggcCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAg                                                                                  <  1:29744/150‑1 (MQ=255)
                                                               cggcCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAgg                                                                                 <  2:497376/150‑1 (MQ=255)
                                                                 gcCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGc                                                                                            <  2:568849/137‑1 (MQ=255)
                                                                 gcCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGc                                                                                            >  1:568849/1‑137 (MQ=255)
                                                                   cGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGt                                                                             <  1:422175/150‑1 (MQ=255)
                                                                         gATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCa                                                                       >  1:172872/1‑150 (MQ=255)
                                                                             gAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCtggt                                                                                               <  1:1017451/122‑1 (MQ=255)
                                                                             gAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCtggt                                                                                               >  2:1017451/1‑122 (MQ=255)
                                                                             gAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTAc                                                                   <  1:1202368/150‑1 (MQ=255)
                                                                             gAGGTCCTTGAGGGTCTCAAGTATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCCGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTAc                                                                   >  2:955369/1‑150 (MQ=255)
                                                                              aGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGCCTCGATttccgcaagctgtcg                                                                                                                                       >  2:510044‑M2/1‑68 (MQ=255)
                                                                              aGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGCCTCGATttccgcaagctgtcg                                                                                                                                       <  1:510044‑M2/83‑16 (MQ=255)
                                                                                gTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGa                                                                                         <  1:1272044/125‑1 (MQ=255)
                                                                                gTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGa                                                                                         >  2:1272044/1‑125 (MQ=255)
                                                                                     tGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCt                                                           >  1:1140058/1‑150 (MQ=255)
                                                                                          gTCGCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCg                                                      <  1:313184/150‑1 (MQ=255)
                                                                                               gAGGATGCCCGTGAGGTTGGCGGCGACTGGCAGCTTGCGGAAGATCGAGCCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGTATGTGCTGTTGGCTGACAGCGAGGTTGTGGCTCAATACCCGGCCCTGTTCGGCCTg                                                 <  2:468608/150‑1 (MQ=255)
                                                                                                      gCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGACCAGc                                          <  1:1262178/150‑1 (MQ=255)
                                                                                                       ccATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGACCAGcc                                         <  2:1217549/150‑1 (MQ=255)
                                                                                                       ccATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGACCAGcc                                         >  2:1172343/1‑150 (MQ=255)
                                                                                                       ccATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGACCAGcc                                         >  1:341662/1‑150 (MQ=255)
                                                                                                           gatgTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGACCAGCCCGAc                                     <  1:97420/150‑1 (MQ=255)
                                                                                                           gatgTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGACCAGCCCGAc                                     <  1:97426/150‑1 (MQ=255)
                                                                                                                tgtCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGACCAGCCCGACAATCa                                <  1:1193545/150‑1 (MQ=255)
                                                                                                                 gtCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCa                                                                                                                        >  2:278335/1‑61 (MQ=255)
                                                                                                                 gtCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCa                                                                                                                        <  1:278335/61‑1 (MQ=255)
                                                                                                                 gtCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGACCAGCCCGACAATCAt                               <  2:770908/150‑1 (MQ=255)
                                                                                                                  tCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGACCAGCCCGACAATCATg                              <  2:242117/150‑1 (MQ=255)
                                                                                                                  tCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGACCAGCCCGACAATCATg                              <  1:1085561/150‑1 (MQ=255)
                                                                                                                       gaccgacAGGTTGCGGAAGATCGAGGCGTCCTGCGGCAGGTAGGCGATTCCGGCACGGGTGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGACCAGCCCGACAATCATGTAGaa                         <  2:348271/150‑1 (MQ=255)
                                                                                                                          cgacAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCt                                                                                           <  1:976020/81‑1 (MQ=255)
                                                                                                                          cgacAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCt                                                                                           >  2:976020/1‑81 (MQ=255)
                                                                                                                              aGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGACCAGCCCGACAATCATGTAGAAGCAAGTg                  <  1:168753/150‑1 (MQ=255)
                                                                                                                                 ttGCGGAAGATCGAGGcttccgcaagctgtcggtcgccgacaacatcatggccatcctcgagacccgcaaggacctc                                                                                        >  2:242552‑M2/1‑16 (MQ=255)
                                                                                                                                 ttGCGGAAGATCGAGGcttccgcaagctgtcggtcgccgacaacatcatggccatcctcgagacccgcaaggacctc                                                                                        <  1:242552‑M2/77‑62 (MQ=255)
                                                                                                                                     ggAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGACCAGCCCGACAATCATGTAGAAGCAAGTGGTCTTGc           >  1:1001194/1‑150 (MQ=255)
                                                                                                                                      gAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCtgg                                                                                                >  2:114495/1‑64 (MQ=255)
                                                                                                                                      gAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCtgg                                                                                                <  1:114495/64‑1 (MQ=255)
                                                                                                                                               aGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGACCAGCCCGACAATCATGTAGAAGCAAGTGGTCTTGCCGGCGCCGt  >  2:679754/1‑150 (MQ=255)
                                                                                                                                                 |                                                                                                                                                   
CCGAGGTTGTCCCGGATGTGGCTGATGTGGAACTCCTGCAGCAGGCTTTCCAGCTCTTTGCGGCGGCCGTCCCGATCGAGGTCCTTGCGGGTCTCGAGGATGGCCATGATGTTGTCGGCGACCGACAGCTTGCGGAAGATCGAGGCTTCCTGCGGCAGGTAGCCGATTCCGGCACGGGCGCGGCCGTGCATGGGCTGGTGGCTGACATCGAGGTTGTCGATCAGTACCCGGCCCTGTTCGGCCTGGACCAGCCCGACAATCATGTAGAAGCAAGTGGTCTTGCCGGCGCCGT  >  NC_002947/1096563‑1096854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.