New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2050638	26 (0.530)	10 (0.290)	7/176	NT	34.3%	intergenic (‑88/+87)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	= 2050674	20 (0.580)					intergenic (‑124/+51)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein

GAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACA  >  NC_002947/2050531‑2050822                                                                                                                                                 |                                                                                                                                                     gAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtagga                                                                                                                                                >  1:858012‑M2/1‑144 (MQ=255)   aaaaTCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagc                                                                                                                                              >  1:1052418‑M2/1‑142 (MQ=255)   aaaaTCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagc                                                                                                                                              >  2:895127‑M2/1‑142 (MQ=255)      aTCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcggg                                                                                                                                           >  2:81566‑M2/1‑139 (MQ=255)      aTCGTCGTCCTGCATGATGCCTCCACGTAGGCGGCGTAGTGTACGCGACTGTTGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcggg                                                                                                                                           >  2:236412‑M2/1‑139 (MQ=255)        cgtcgtCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTTGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGG‑GATGTAACAGATCCCGAAGACGGCGGGGTGCCTgtaggagcgggtt                                                                                                                                         >  1:303933‑M2/1‑137 (MQ=255)           cgtcTTGCATGATGCCTCCACGTCGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTCCGAGGGTGAACCCGCTCCAACAGCAGGTGTGT‑AGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcac                                                                                                                                      >  1:863724‑M2/1‑134 (MQ=255)            gtcTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacc                                                                                                                                     <  2:863724‑M2/150‑18 (MQ=255)                                   ggcggcGTAGTTTACGCGGCTGGGGGGGGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGGTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTa                                                                                                              <  2:736665/150‑1 (MQ=255)                                     cggcgTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCt                                                                                                                                                      >  2:98238/1‑108 (MQ=255)                                     cggcgTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCt                                                                                                                                                      <  1:98238/108‑1 (MQ=255)                                                                        ccTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTgcgg                                                                         >  1:1163387/1‑150 (MQ=255)                                                                                    tctTCGCGGGTGAACCCGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAg                                                             >  1:324156/1‑150 (MQ=255)                                                                                    tctTCGCGGGTGAACCCGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAg                                                             <  2:1163387/150‑1 (MQ=255)                                                                                      ttCGCGGGTGAACCCGCTCCTACGGG‑GATGTCACAGAGCCCGAANACGNCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAGGCt                                                           >  1:844138/1‑150 (MQ=255)                                                                                             gTGAACCCGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTcccgccc                                                    >  2:612185/1‑150 (MQ=255)                                                                                                  cccGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGATCGGGTTCAACCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCgcggc                                               >  1:1157015/1‑150 (MQ=255)                                                                                                  cccGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCgcggc                                               >  1:119297/1‑150 (MQ=255)                                                                                                   ccGCTCCTACGGG‑GATGTCACAGAGCCCGACGACGGCGGGGTGCCTGTAGGAGCGGGTTGACCCGCGAAGAGGCCCGCACAGGGTACGCAAAACCATAAATCGTGCTTCTTCATCAGGTGCGCCGCCAGGTTAAGCTCCCGGCTgcggcg                                              >  1:489791/1‑150 (MQ=255)                                                                                                   ccGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgatt                                              <  1:113748‑M2/150‑105 (MQ=255)                                                                                                   ccGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgatt                                              <  2:30433‑M2/150‑105 (MQ=255)                                                                                                   ccGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgatt                                              <  1:757018‑M2/150‑105 (MQ=255)                                                                                                   ccGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggagg                                                                  >  2:494790‑M2/1‑46 (MQ=255)                                                                                                   ccGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggagg                                                                  <  1:494790‑M2/130‑85 (MQ=255)                                                                                                     gCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgatttt                                            <  2:895754‑M2/150‑107 (MQ=255)                                                                                                     gCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggc                                                                                                                >  2:963215‑M2/1‑44 (MQ=255)                                                                                                     gCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggc                                                                                                                <  1:963215‑M2/82‑39 (MQ=255)                                                                                                        ccTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgatttttcc                                         >  1:895754‑M2/1‑41 (MQ=255)                                                                                                          tACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGc                                         >  2:1112478/1‑148 (MQ=255)                                                                                                          tACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGc                                         <  1:1112478/148‑1 (MQ=255)                                                                                                                  aTGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgatttttccctgttcaag                                >  2:113748‑M2/1‑32 (MQ=255)                                                                                                                     tCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCa                                                                                                    >  2:178425/1‑79 (MQ=255)                                                                                                                     tCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCa                                                                                                    <  1:178425/79‑1 (MQ=255)                                                                                                                     tCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCGCGCCCGCGGCGCAAGCGGATACGGCTgc                             >  2:51768/1‑150 (MQ=255)                                                                                                                       acaGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTgcgc                           >  1:378580/1‑150 (MQ=255)                                                                                                                        caGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTccc                                                        <  2:975287/120‑1 (MQ=255)                                                                                                                        caGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTccc                                                        >  1:975287/1‑120 (MQ=255)                                                                                                                        caGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGGTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTGAAGCTCCCGCCCGCCGCGCAAGCAGATACGGCTGcgcc                          >  2:457892/1‑150 (MQ=255)                                                                                                                         agagCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGcgccg                         >  1:1017189/1‑150 (MQ=255)                                                                                                                            gCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTTTTCATCAGGTGCGGCGANAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCa                      <  1:457892/150‑1 (MQ=255)                                                                                                                              ccGAAGACGGCGGGGTGCCTgtaggagcgtgttcacccgccaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgatttttccctgttcaaggccgaagtgcgc                    <  1:1222024‑M2/150‑131 (MQ=255)                                                                                                                                        cggGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgatttttccctgttcaaggccgaagtgcgcggcgtaaagc          >  2:757018‑M2/1‑10 (MQ=255)                                                                                                                                          gggTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCa        <  2:1017189/150‑1 (MQ=255)                                                                                                                                               ccTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCcac   >  2:897678/1‑150 (MQ=255)                                                                                                                                                cTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCcaca  >  2:799817/1‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGG‑GATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACA  >  NC_002947/2050531‑2050822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.