New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2414787	28 (0.570)	5 (0.110)	3/234	NT	13.5%	intergenic (+286/‑59)	PP_2114/PP_2115	transposase/hypothetical protein
	?	NC_002947	4908051 =	38 (0.830)					coding (19/198 nt)	PP_4317	hypothetical protein

GCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTA  >  NC_002947/4907905‑4908200                                                                                                                                                   |                                                                                                                                                       gCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCTTTGCCGTTGCCGTTGCCGTTGATCTTAATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAg                                                                                                                                                    <  1:725752/150‑1 (MQ=255)     aaCTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGGTCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAg                                                                                                                                                >  1:447460/1‑150 (MQ=255)               tgCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCa                                                                                                                                      >  1:951614/1‑150 (MQ=255)                 cTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATg                                                                                                                                    >  1:206468/1‑150 (MQ=255)                   gttgttGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGa                                                                                                                                  >  2:450850/1‑150 (MQ=255)                     tgttgctgttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATg                                                                                                                                <  2:69363/150‑1 (MQ=255)                      gttgctgttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGc                                                                                                                               >  1:1095629/1‑150 (MQ=255)                         gctgttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAg                                                                                                                                                >  1:1188344/1‑130 (MQ=255)                         gctgttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAg                                                                                                                                                <  2:1188344/130‑1 (MQ=255)                         gctgttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCg                                                                                                                            >  1:1016825/1‑150 (MQ=255)                             ttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCaa                                                                                                                        >  2:1166165/1‑150 (MQ=40)                               gctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAgc                                                                                                                      <  2:1251968/150‑1 (MQ=255)                                    tgccgttgccgttgccgttgccgttgccgtTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGa                                                                                                                 <  2:839587/150‑1 (MQ=38)                                           gccgttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCa                                                                                                          <  2:704944/150‑1 (MQ=39)                                               ttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTTATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAt                                                                                                      >  1:1152546/1‑150 (MQ=37)                                                 gccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATgg                                                                                                    <  1:450850/150‑1 (MQ=38)                                                    gttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGc                                                                                                 <  1:1166165/150‑1 (MQ=39)                                                       gccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCtt                                                                                              <  2:951614/150‑1 (MQ=38)                                                           ttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGAGCTGAGGCCCCAGGATGGTGCCTTCGgc                                                                                          <  2:1043435/150‑1 (MQ=21)                                                               cgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCTGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCg                                                                                            >  2:829065/1‑144 (MQ=14)                                                               cgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCTGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCg                                                                                            <  1:829065/144‑1 (MQ=14)                                                               cgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCgg                                                                                      >  1:1245927/1‑150 (MQ=31)                                                                     aaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccggccttgcG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGc                                                                                >  1:332505‑M2/79‑150 (MQ=255)                                                                           aaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccggccttgcTCCCGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGa                                                                           <  2:321397‑M2/78‑1 (MQ=255)                                                                                     cgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccggccttgcG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGa                                                                <  2:332505‑M2/88‑1 (MQ=255)                                                                                                    cttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCgg                                                 >  1:206569/1‑150 (MQ=32)                                                                                                          cttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATAGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGagcgca                                           >  2:1171996/1‑150 (MQ=17)                                                                                                             ctgcgctgcgctccggggtcccctcactccggccttgcG‑AAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCg                                                                  >  1:1282643‑M2/39‑124 (MQ=255)                                                                                                             ctgcgctgcgctccggggtcccctcactccggccttgcG‑AAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCg                                                                  <  2:1282643‑M2/86‑1 (MQ=255)                                                                                                                 ttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCGGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAgg                                    <  2:447460/150‑1 (MQ=17)                                                                                                                 ttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAgg                                    >  2:475176/1‑150 (MQ=32)                                                                                                                    gcgACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGc                                 >  1:9575/1‑150 (MQ=32)                                                                                                                    gcgACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGc                                 >  1:1082499/1‑150 (MQ=32)                                                                                                                       aCTTCAGGAGGCCGAACGCAGGCCTTGCC‑GAGGCAGCTGTCGAGAGCTACTTGCTGCAAAGCTGTCAGGCGCGATTATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCgg                              >  1:348515/1‑150 (MQ=2)                                                                                                                           cAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGNGAGGCCNGAGTGAGGGGACNCCGGAGCGCAGCGCAGGGGCCGgatga                          <  1:1171996/150‑1 (MQ=17)                                                                                                                            aggaggCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAgg                                    >  1:493106/1‑139 (MQ=33)                                                                                                                            aggaggCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAgg                                    <  2:493106/139‑1 (MQ=33)                                                                                                                             ggaggCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATACCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGatgatg                        >  1:935734/1‑150 (MQ=17)                                                                                                                                ggCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGa                     <  2:9575/150‑1 (MQ=32)                                                                                                                                 gCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAg                    <  2:1095629/150‑1 (MQ=32)                                                                                                                                 gCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAg                    <  1:475176/150‑1 (MQ=32)                                                                                                                                   cGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAgcg                  >  2:536947/1‑150 (MQ=32)                                                                                                                                   cGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAgcg                  >  1:973949/1‑150 (MQ=32)                                                                                                                                     aaCGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCa                <  2:1016825/150‑1 (MQ=32)                                                                                                                                        gCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGGCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGCTGGGGGCGCAGCg             >  1:429397/1‑150 (MQ=12)                                                                                                                                          aGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGCCACAAGAGCCCAGCCCATGGGCCGGATGATGGGAGCGCAGCGtt           >  2:782687/1‑150 (MQ=11)                                                                                                                                              cttgcG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGa                     <  2:397713‑M2/131‑1 (MQ=255)                                                                                                                                              cttgcG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGa                     >  1:397713‑M2/6‑136 (MQ=255)                                                                                                                                              cttgcG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGtttttt       <  2:1152546‑M2/145‑1 (MQ=255)                                                                                                                                              cttgcG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGtttttt       <  1:536947‑M2/145‑1 (MQ=255)                                                                                                                                               ttgcG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGACCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTg      >  2:268284‑M2/5‑150 (MQ=255)                                                                                                                                                 gcG‑GAGGCAGGTGACGGGCATGTATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGt    <  2:348515‑M2/148‑1 (MQ=255)                                                                                                                                                   g‑gAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTa  >  2:1043838/1‑150 (MQ=32)                                                                                                                                                   |                                                                                                                                                       GCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTA  >  NC_002947/4907905‑4908200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.