New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2743949	47 (0.960)	5 (0.110)	5/236	NT	10.6%	coding (271/834 nt)	PP_2398	hypothetical protein
	?	NC_002947	= 2743962	40 (0.860)					coding (284/834 nt)	PP_2398	hypothetical protein

TGGCAAGGGCTTGGCCCAGTTGGCGGAGCGCTTTGCTGTCACCTGTCATGGGTTGTCTTTATCGCTGGGTGGCAGTGCCCCGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCATACGCCAGGCTCAGGAGCAGCTGGAGCGGCGCATTGCCGTGGAGAACATCAGCTAC  >  NC_002947/2743813‑2744110                                                                                                                                                       |                                                                                                                                                     tGGCAAGGGCTTGGCCCAGTTGGCGGAGCGCTTTGCTGTCACCTGTCATGGGTTGTCTTTATCGCTGGGTGGCAGTGCCCCGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGa                                                                                                                                                      >  1:1177058/1‑150 (MQ=255)   gCAAGGGCTTGGCCCAGTTGGCGGAGCGCTTTGCTGTCACCTGTCATGGGTTGTCTTTATCGCTGGGTGGCAGTGCCCCGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAgc                                                                                                                                                    <  1:1107313‑M2/150‑3 (MQ=255)       gggCTTGGCCCAGTTGGCGGAGCGCTTTGCTGTCACCTGTCATGGGTTGTCTTTATCGCTGGGTGGCAGTGCCCCGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGCCACCGGGTGCGA‑CTGTACAGCGAgcacct                                                                                                                                                >  1:174543‑M2/1‑144 (MQ=255)                   gTTGGCGGAGCGCTTTGCTGTCACCTGTCATGGGTTGTCTTTATCGCTGGGTGGCAGTGCCCCGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCTCGCTGTACAGTCcacctggtatcggtcga                                                                                                                                      >  1:819720‑M2/1‑133 (MQ=255)                           aGCGCTTTGCTGTCACCTGTCATGGGTTGTCTTTATCGCTGGGTGGCAGTGCCCCGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACg                                                                                                                            <  2:398445/150‑1 (MQ=255)                                                          tttATCGCTGGGTGGCAGTGCCCCGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTAc                                                                                                                 <  2:680435/130‑1 (MQ=255)                                                          tttATCGCTGGGTGGCAGTGCCCCGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTAc                                                                                                                 >  1:680435/1‑130 (MQ=255)                                                          tttATCGCTGGGTGGCAGTGCCCCGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATc                                                                                                  >  2:434394/1‑145 (MQ=255)                                                          tttATCGCTGGGTGGCAGTGCCCCGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATc                                                                                                  <  1:434394/145‑1 (MQ=255)                                                           ttATCGCTGGGTGGCAGTGCCCCGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTc                                                                                            <  2:1177058/150‑1 (MQ=255)                                                              tCGCTGGGTGGCAGTGCCCCGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGc                                                                                                       >  1:1272773/1‑136 (MQ=255)                                                              tCGCTGGGTGGCAGTGCCCCGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGc                                                                                                       <  2:1272773/136‑1 (MQ=255)                                                                      tGGCAGTGCCCCGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTa                                                                                                                  <  2:1129484/117‑1 (MQ=255)                                                                      tGGCAGTGCCCCGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTa                                                                                                                  >  1:1129484/1‑117 (MQ=255)                                                                           gTGCCCCGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTAc                                                                            <  2:1107313/150‑1 (MQ=255)                                                                                ccGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCAt                                                                       >  1:321889/1‑150 (MQ=255)                                                                                    tGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTgg                                                                   <  2:1165327/150‑1 (MQ=255)                                                                                         cGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCcgcg                                                              >  1:615314/1‑150 (MQ=255)                                                                                         cGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCcgcg                                                              >  2:907725/1‑150 (MQ=255)                                                                                             aTTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCa                                                          <  2:615314/150‑1 (MQ=255)                                                                                             aTTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCa                                                          >  2:905287/1‑150 (MQ=255)                                                                                              tttCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGAt                                                                                      >  1:116434/1‑121 (MQ=255)                                                                                              tttCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGAt                                                                                      <  2:116434/121‑1 (MQ=255)                                                                                                 ccTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGc                                                                                 >  1:889582/1‑123 (MQ=255)                                                                                                 ccTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGc                                                                                 <  2:889582/123‑1 (MQ=255)                                                                                                  cTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCATACGc                                                     >  1:900084/1‑150 (MQ=255)                                                                                                   ttGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCATACGcc                                                    >  2:633959/1‑150 (MQ=255)                                                                                                        cAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGccc                                                                                                     >  2:522059/1‑96 (MQ=255)                                                                                                        cAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGccc                                                                                                     <  1:522059/96‑1 (MQ=255)                                                                                                          gACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCATACGCCAGGCTCa                                             <  1:905287/150‑1 (MQ=255)                                                                                                           aCCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCATACGCCAGGCTCAg                                            <  1:907725/150‑1 (MQ=255)                                                                                                            cccGGCAGTTTCTCGGCCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCATACGCCAGGCTCAgg                                           <  2:892873/150‑1 (MQ=255)                                                                                                             ccGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGCGCTACTGCAGTGATGACGGGCACCTGTACGACCTGAt                                                                                                         <  1:1041502/87‑1 (MQ=255)                                                                                                             ccGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGAt                                                                                                         >  2:1041502/1‑87 (MQ=255)                                                                                                             ccGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGc                                                                                                       >  1:205069/1‑89 (MQ=255)                                                                                                             ccGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGc                                                                                                       <  2:205069/89‑1 (MQ=255)                                                                                                             ccGGCAGTTTCTCGACCGAAACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCATACGCCAGGCTCAGGa                                          >  2:21383/1‑150 (MQ=255)                                                                                                                       ctcGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCATACGCCAGGCTCAGGAGCAGCTGGAg                                <  1:92708/150‑1 (MQ=255)                                                                                                                       ctcGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCATACGCCAGGCTCAGGAGCAGCTGGAg                                <  1:633959/150‑1 (MQ=255)                                                                                                                          gACCGATACCAGGTGCGA‑CTGTACAGCGAgcacctggtatcggtcgagaaactgccgggtctgctcaaggaaatgtcgg                                                                                                    >  1:151322‑M2/1‑29 (MQ=255)                                                                                                                          gACCGATACCAGGTGCGA‑CTGTACAGCGAgcacctggtatcggtcgagaaactgccgggtctgctcaaggaaatgtcgg                                                                                                    <  2:151322‑M2/79‑51 (MQ=255)                                                                                                                          gACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCATACGCCAGGCTCAGGAGCAGCTGGAgcgg                             >  2:128557/1‑150 (MQ=255)                                                                                                                           aCCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCATACGCCAGGCTCAGGAGCAGCTGGAgcggc                            <  1:483404/150‑1 (MQ=255)                                                                                                                           aCCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCATACGCCAGGCTCAGGAGCAGCTGGAgcggc                            >  2:946883/1‑150 (MQ=255)                                                                                                                                   cAGGTGCGA‑CTGTACAGCGAgcacctggtatcggtcgagaaactgccgggtctgctcaaggaaatgtcggtccagcggggcactgccacccagcgataaagacaacccatgacaggtgacagcaaagcgctccgccaactgggccaagcc                    <  1:985910‑M2/150‑131 (MQ=255)                                                                                                                                     ggTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCATACGCCAGGCTCAGGAGCAGCTGGAGCGGCGCATTGCCGt                  <  2:900084/150‑1 (MQ=255)                                                                                                                                        gCGA‑CTGTACAGCGAgcacctggtatcggtcgagaaactgccgggtctgctcaaggaaatgtcggtccagcggggcactgccacccagcgataaagacaacccatgacaggtgacagcaaagcgctccgccaactgggccaagcccttgc               >  2:819720‑M2/1‑15 (MQ=255)                                                                                                                                           a‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCATACGCCAGGCTCAGGAGCAGCTGGAGCGGCGCATTGCCGTGGAGaa            >  2:394163/1‑150 (MQ=255)                                                                                                                                                   aGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCAc                                                                                          <  1:1159869/65‑1 (MQ=255)                                                                                                                                                   aGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCAc                                                                                          >  2:1159869/1‑65 (MQ=255)                                                                                                                                                    gCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCATACGCCAGGCTCAGGAGCAGCTGGAGCGGCGCATTGCCGTGGAGAACATCAGct    <  2:321889/150‑1 (MQ=255)                                                                                                                                                      gAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCATACGCCAGGCTCAGGAGCAGCTGGAGCGGCGCATTGCCGTGGAGAACATCAGctac  >  2:28222/1‑150 (MQ=255)                                                                                                                                                       |                                                                                                                                                     TGGCAAGGGCTTGGCCCAGTTGGCGGAGCGCTTTGCTGTCACCTGTCATGGGTTGTCTTTATCGCTGGGTGGCAGTGCCCCGCTGGACCGACATTTCCTTGAGCAGACCCGGCAGTTTCTCGACCGATACCAGGTGCGA‑CTGTACAGCGAGCACCTGAGCTACTGCAGTGATGACGGGCACCTGTACGACCTGATGCCCATCCCGTTCACCGATGAAGCCGTACGCCATGTGGCCGCGCGCATACGCCAGGCTCAGGAGCAGCTGGAGCGGCGCATTGCCGTGGAGAACATCAGCTAC  >  NC_002947/2743813‑2744110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.