New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3270926	42 (0.860)	3 (0.070)	3/232	NT	6.7%	coding (1202/1953 nt)	PP_2869	FMN‑binding oxidoreductase
	?	NC_002947	= 3270943	45 (0.990)					coding (1185/1953 nt)	PP_2869	FMN‑binding oxidoreductase

CAGGTTGGTACTGGCACCCCCGAACTCGCTACGCCGTGGCAGTAGCTGGGCCAGTAGCACCTGCCCACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCTGGATGCAGGAAATGGGCAAGCCACGATGGAAATGGCCGATGCATGCCTGGTTGCAGGCGATG  >  NC_002947/3270796‑3271090                                                                                                                                                    |                                                                                                                                                    cAGGTTGGTACTGGCACCCCCGAACTCGCTACGCCGTGGCAGTAGCTGGGCCAGTAGCACCTGCCCACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCcc                                                                                                                                                   >  2:497820‑M2/1‑148 (MQ=255)    gTTGGTACTGGCACCCCCGAACTCGCTACGCCGTGGCAGTAGCTGGGCCAGTAGCACCTGCCCACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCccgcc                                                                                                                                                <  1:941148‑M2/150‑6 (MQ=255)    gTTGGTACTGGCACCCCCGAACTCGCTACGCCGTGGCAGTAGCTGGGCCAGTAGCACCTGCCCACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCccgcc                                                                                                                                                <  1:734306‑M2/150‑6 (MQ=255)            tGGCACCCCCGAACTCGCTACGCCGTGGCAGTAGCTGGGCCAGTAGCACCTGCCCACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCccgccgccg                                                                                                                                            <  1:457659‑M2/146‑10 (MQ=255)            tGGCACCCCCGAACTCGCTACGCCGTGGCAGTAGCTGGGCCAGTAGCACCTGCCCACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCccgccgccg                                                                                                                                            >  2:457659‑M2/1‑137 (MQ=255)             ggCACCCCTGAACTCGCTACGCCGTGGCAGTAGCTGGGCCAGTAGCACCTGCCCACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGAt                                                                                                                                       >  2:744891/1‑150 (MQ=255)                     cGAACTCGCTACGCCGTGGCAGTAGCTGGGCCAGTAGCACCTGCCCACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGc                                                                                                                               <  1:594536/150‑1 (MQ=255)                         cTCGCTACGCCGTGGCAGTAGCTGGGCCAGTAGCACCTGCCCACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGGCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGttt                                                                                                                           <  2:941148/150‑1 (MQ=255)                              tACGCCGTGGCAGTAGCTGGGCCAGTAGCACCTGCCCACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCg                                                                                                                      >  2:1192685/1‑150 (MQ=255)                                cGCCGTGGCAGTAGCTGGGCCAGTAGCACCTGCCCACCGAGCTGCGGGCCCTCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGTCGATCATTATGCGTTTGGGCTAg                                                                                                                    <  2:904950/150‑1 (MQ=255)                                          gTAGCTGGGCCAGTAGCACCTGCCCACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCCTTTGGGCGCGGGAGGGGGCg                                                                                                          >  2:1037163/1‑150 (MQ=255)                                             gCTGGGCCAGTAGCACCTGCCCACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATACGTTTGGGCGAGGAAGTGGGCGTGa                                                                                                       <  1:744891/150‑1 (MQ=255)                                                gggCCAGTAGCACCTGCCCACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGt                                                                                                    >  2:934508/1‑150 (MQ=255)                                                    cAGTAGCACCTGCCCACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGccc                                                                                                >  1:1156076/1‑150 (MQ=255)                                                           aCCTGCCCACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGc                                                                                         <  1:934508/150‑1 (MQ=255)                                                            ccTGCCCACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCa                                                                                        >  2:493122/1‑150 (MQ=255)                                                                  cACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCAc                                                                                  <  1:1037163/150‑1 (MQ=255)                                                                          tGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGtt                                                                          >  1:215482/1‑150 (MQ=255)                                                                            cGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTc                                                                        >  2:1274692/1‑150 (MQ=255)                                                                               gCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCgg                                                                     <  2:215482/150‑1 (MQ=255)                                                                                cccGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCggg                                                                    <  2:69984/150‑1 (MQ=255)                                                                                 ccGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCCACTCACGCCCGGTTTCCGGgc                                                                   >  2:658973/1‑150 (MQ=255)                                                                                   gCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTc                                                                        <  2:953305/143‑1 (MQ=255)                                                                                   gCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTc                                                                        >  1:953305/1‑143 (MQ=255)                                                                                    ccTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCt                                                                >  2:753324/1‑150 (MQ=255)                                                                                    ccTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCt                                                                >  1:106420/1‑150 (MQ=255)                                                                                    ccTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTCGGGCGAGGAAGTGGGCGTGAg                                                                                                      >  1:917827/1‑112 (MQ=255)                                                                                    ccTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTCGGGCGAGGAAGTGGGCGTGAg                                                                                                      <  2:917827/112‑1 (MQ=255)                                                                                             gCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCAGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAg                                                                                                      <  1:309054/103‑1 (MQ=255)                                                                                             gCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCAGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAg                                                                                                      >  2:309054/1‑103 (MQ=255)                                                                                                 gACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCTGGATGCAGGAAAt                                                   >  1:704466/1‑150 (MQ=255)                                                                                                   ccTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCTGGATGCAGGAAATgg                                                 <  1:1192685/150‑1 (MQ=255)                                                                                                       gTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTAc                                                                                            <  2:645900/103‑1 (MQ=255)                                                                                                       gTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTAc                                                                                            >  1:645900/1‑103 (MQ=255)                                                                                                          cccGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGGTGGATGCAGGAAGTGGGCAAccc                                          >  2:564012/1‑150 (MQ=255)                                                                                                            cgcgcgcgGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAg                                                                                                                    >  1:1027221/1‑74 (MQ=255)                                                                                                            cgcgcgcgGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAg                                                                                                                    <  2:1027221/74‑1 (MQ=255)                                                                                                             gcgcgcgGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCccgccgccgtggccgccgcgcgcgggcaccaggtcacgctgtacgaggcgggcccgcagctcggtgggcaggtgctactggcccagc                                                              <  2:368803‑M2/127‑88 (MQ=255)                                                                                                             gcgcgcgGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCccgccgccgtggccgccgcgcgcgggcaccaggtcacgctgtacgaggcgggcccgcagctcggtgggcaggtgctactggcccagc                                                              >  1:368803‑M2/1‑40 (MQ=255)                                                                                                             gcgcgcgGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCTGGATGCAGGAAATGGGCAAGCCACg                                       >  2:100929/1‑150 (MQ=255)                                                                                                               ggccggcggCCGCGGCGGGGGCGTTCAGGGCGGCCGGCCGGCCGCCGGCGATCATTATGCGTTCGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCTGGATGCAGGAAATGGGCATGCCACGAt                                     <  2:6874/147‑1 (MQ=255)                                                                                                               gcgcgGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCccgccgccgtggccgccgcgcgcgggcaccaggtcacgctgtacgaggcgggcccgcagctcggtgggcaggtgctactggcccagctactgccacggcgtagcgagttcgg                                     <  2:47376‑M2/150‑113 (MQ=255)                                                                                                                          aCGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCTGGATGCAGGAAATGGGCAAGCCACGATGGAAATGGCCg                          >  2:25928/1‑150 (MQ=255)                                                                                                                              cggcggcCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGGAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCg                                                                             <  2:360627/95‑1 (MQ=255)                                                                                                                              cggcggcCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGGAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCg                                                                             >  1:360627/1‑95 (MQ=255)                                                                                                                                gcggcCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCTGGATGCAGGaa                                                     >  2:1166942/1‑117 (MQ=255)                                                                                                                                gcggcCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCTGGATGCAGGaa                                                     <  1:1166942/117‑1 (MQ=255)                                                                                                                                     cTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCTGGATGCAGGAAATGGGCAAGCCACGATGGAAATGGCCGATGCATGCCTg               <  1:493122/150‑1 (MQ=255)                                                                                                                                     cTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCTGGATGCAGGAAATGGGCAAGCCAAGCCGGAAATGGCCGATGCAGGCCTg               >  2:1037037/1‑150 (MQ=255)                                                                                                                                      ttCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCTGGATGCAGGAAATGGGCAAGCCACGATGGAAATGGCCGATGCATGCCTgg              >  1:716631/1‑150 (MQ=255)                                                                                                                                      ttCATGCCGGCCGGCCCGCCGCCGGCGAGCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCTGGATGCAGGAAATGGGCAAGCCACGATGGAAATGGCCGATGCATGCCTgg              <  1:100929/150‑1 (MQ=255)                                                                                                                                         aTGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCCCCTGGCGGATCCGGGCGCTGGATGCAGGAAATGGGCAAGCCACGATGGAAATCGCCGATGCATGCCTGGTTg           >  1:79626/1‑150 (MQ=255)                                                                                                                                           gccggccgGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCTGGATGCAGGAAATGGGCAAGCCACGATGGAAATGGCCGATGCATGCCTGGTTGCa         <  2:704466/150‑1 (MQ=255)                                                                                                                                             cggccggcCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCTGGATGCAGGAAATGGGCAAGCCACGATGGAAATGGCCGATGCATGCCTGGTTGCAgg       >  1:314877/1‑150 (MQ=255)                                                                                                                                                  ggccCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCTGGATGCAGGAAATGGGCAAGCCACGATGGAAATGGCCGATGCATGCCTGGTTGCAGGCGATg  >  2:197846/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CAGGTTGGTACTGGCACCCCCGAACTCGCTACGCCGTGGCAGTAGCTGGGCCAGTAGCACCTGCCCACCGAGCTGCGGGCCCGCCTCGTACAGCGTGACCTGGTGCCCGCGCGCGGCGGCCACGGCGGCGGCCTTCATGCCGGCCGGCCCGCCGCCGGCGATCATTATGCGTTTGGGCGAGGAAGTGGGCGTGAGGTGCCCGTACTGCAACTCACGCCCGGTTTCCGGGCGCTGGATGCAGGAAATGGGCAAGCCACGATGGAAATGGCCGATGCATGCCTGGTTGCAGGCGATG  >  NC_002947/3270796‑3271090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.