New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4140183 =	48 (0.980)	4 (0.090)	4/234	NT	9.4%	intergenic (+31/‑234)	PP_3644/PP_5609	monooxygenase subunit/hypothetical protein
	?	NC_002947	4140222 =	32 (0.700)					intergenic (+70/‑195)	PP_3644/PP_5609	monooxygenase subunit/hypothetical protein

CCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCACAACAAATATTATGGTA  >  NC_002947/4140089‑4140371                                                                                                                                      |                                                                                                                                                      aaggtggcctgatgccttgatttctctgttgtctgtactggcctcttcgcgggcttgcccgctcccacagggactgcacaggtttcaaaaaaaaGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCttttttt                                                                                                                                                 >  2:805415‑M1/95‑140 (MQ=255) aaggtggcctgatgccttgatttctctgttgtctgtactggcctcttcgcgggcttgcccgctcccacagggactgcacaggtttcaaaaaaaaGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCttttttt                                                                                                                                                 <  1:805415‑M1/46‑1 (MQ=255)         agaagaagaAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTccc                                                                                                                               <  2:332559/150‑1 (MQ=255)            agaagaagTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCtgt                                                                                                                            <  1:296279/150‑1 (MQ=255)                           aGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGcc                                                                                                             >  2:1108783/1‑150 (MQ=255)                                   atcaAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAaga                                                                                                     >  1:1072450/1‑150 (MQ=255)                                   atcaAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAaga                                                                                                     >  2:605946/1‑150 (MQ=255)                                   atcaAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAaga                                                                                                     >  2:580095/1‑150 (MQ=255)                                   atcaAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAaga                                                                                                     >  1:1201671/1‑150 (MQ=255)                                    tcaAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGG‑CCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAgg                                                                                                   >  1:767458/1‑150 (MQ=255)                                    tcaAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAAACATTGGGGGACGCGCCCGCTGACGTGGGCCCGTTCGGCCTGCGTGAGCAGACTTTTTTTTGATACCTGTGGCATCCCGGTGGGAGCGGGCCTTCCCGAGAaggg                                                                                                    >  2:89718/1‑148 (MQ=255)                                         gAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAg                                                                                               <  1:1073098/150‑1 (MQ=255)                                                  ccGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCtgt                                                                                                                                       >  2:54741/1‑101 (MQ=255)                                                  ccGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCtgt                                                                                                                                       <  1:54741/101‑1 (MQ=255)                                                    ggCGTTCGCTGGAAGTCCCATTGCCTGAATCATGGCGGGACGGGCCCGGTCCGGCGGGCCCGTTCGGCGTGCGTGAGGGGGCGTTTTTGTGAGACCGGTGCAGGCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCGAGTAGAGacaaca                                                                                    <  2:116368/150‑1 (MQ=255)                                                       gTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCttttttt                                                                                                                                                 <  2:849272/86‑1 (MQ=255)                                                       gTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCttttttt                                                                                                                                                 >  1:849272/1‑86 (MQ=255)                                                             cTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCa                                                                           >  1:613260/1‑150 (MQ=255)                                                                 aTTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGc                                                                       <  1:1108783/150‑1 (MQ=255)                                                                      cATTGCCTGAATCATTGCGGGACGAGGCCAGGTCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAg                                                                  <  1:643341/150‑1 (MQ=38)                                                                            cTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAg                                                                         <  2:879038/137‑1 (MQ=255)                                                                            cTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAg                                                                         >  1:879038/1‑137 (MQ=255)                                                                             tGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCt                                                           >  1:1203273/1‑150 (MQ=255)                                                                                aTCATTGCGGGACGCGCCCGCTCCCGTGGGCGCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTc                                                        <  1:461575/150‑1 (MQ=255)                                                                                 tCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCg                                                       >  1:272897/1‑150 (MQ=255)                                                                                 tCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGCGGGAGGGCGTGTTTGTTAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCg                                                       <  1:607241/150‑1 (MQ=38)                                                                                        aaaaaaagcccgctcacgcaggccgaaggggcccacgggagcgggcTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCtt                                                          >  2:805415‑M2/47‑140 (MQ=255)                                                                                        aaaaaaagcccgctcacgcaggccgaaggggcccacgggagcgggcTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCtt                                                          <  1:805415‑M2/94‑1 (MQ=255)                                                                                         ggACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGc                                                                                                              >  2:1265059/1‑87 (MQ=255)                                                                                         ggACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGc                                                                                                              <  1:1265059/87‑1 (MQ=255)                                                                                          gACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGc                                              >  2:522328/1‑150 (MQ=255)                                                                                              cgcCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAaga                                          <  1:605946/150‑1 (MQ=255)                                                                                                CCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTc                                                        >  2:1223572‑M1/1‑134 (MQ=255)                                                                                                CCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTCTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTc                                                        <  1:1223572‑M1/134‑1 (MQ=255)                                                                                                 ccgctcacgcaggccgaaggggcccacgggagcgggcTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCg                                                >  1:39515‑M2/38‑141 (MQ=255)                                                                                                 ccgctcacgcaggccgaaggggcccacgggagcgggcTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCg                                                <  2:39515‑M2/104‑1 (MQ=255)                                                                                                  CGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGaaa                                      <  2:1020274‑M1/150‑1 (MQ=255)                                                                                                  CGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGaaa                                      <  2:644341‑M1/150‑1 (MQ=255)                                                                                                    CTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAAtt                                    <  1:514911‑M1/150‑1 (MQ=255)                                                                                                     TCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAAttt                                   >  2:1072450‑M1/1‑150 (MQ=255)                                                                                                      CCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTc                                  >  1:580095‑M1/1‑150 (MQ=255)                                                                                                            ggCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGaca                            <  1:1020274/150‑1 (MQ=255)                                                                                                                 cTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGTGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACctct                       >  1:591492/1‑150 (MQ=255)                                                                                                                        cTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAgg                                                                        <  1:1145684/94‑1 (MQ=255)                                                                                                                        cTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAgg                                                                        >  2:1145684/1‑94 (MQ=255)                                                                                                                         tGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCacaac               <  1:522328/150‑1 (MQ=255)                                                                                                                            gTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCACAACaaa            >  1:499866/1‑150 (MQ=255)                                                                                                                             tGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAAATTACATGAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAACTTTCCTCACACCTCTTGCACAACAAat           >  1:1043102/1‑150 (MQ=37)                                                                                                                                 cgggcTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCACAACAAAtatta       <  1:644341‑M2/145‑1 (MQ=255)                                                                                                                                   ggcTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCACAACAAATATTATg     <  2:499866‑M2/147‑1 (MQ=255)                                                                                                                                      ttttttttTAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTcc                                                    >  2:1257995/1‑100 (MQ=255)                                                                                                                                      ttttttttGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTcc                                                    <  1:1257995/100‑1 (MQ=255)                                                                                                                                      ttttttttGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCACAACAAATATTATGGta  <  2:1203273/150‑1 (MQ=255)                                                                                                                                      |                                                                                                                                                      CCACGCCGAGAAGAAGAAGTCGCTCGAGCTGTTCATCAAGGAAGTGGTGCCGGCGTTCGCCTGAATTCCCATTGCCTGAATCATTGCGGGACGCGCCCGCTCCCGTGGGCCCCTTCGGCCTGCGTGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCACAACAAATATTATGGTA  >  NC_002947/4140089‑4140371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.