Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 427,756 | G→T | 9.8% | L16M (CTG→ATG) ‡ | PP_0350 ← | ferrichrome‑iron receptor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 427,756 | 0 | G | T | 9.8% | 153.3 / 4.9 | 51 | L16M (CTG→ATG) ‡ | PP_0350 | ferrichrome‑iron receptor |
Reads supporting (aligned to +/- strand): ref base G (22/24); new base T (3/2); total (25/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.68e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.41e-01 |
GATGGCCAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTATTTAATGGGAT > NC_002947/427610‑427904 | gATGGCCAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGc < 1:774123/150‑1 (MQ=255) aTGGCCAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGcc > 2:726778/1‑150 (MQ=255) tGGCCAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCa < 1:90325/150‑1 (MQ=255) agggCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAgg > 2:1041671/3‑150 (MQ=255) ggCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAgcgc < 1:44765/150‑4 (MQ=255) gCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGCCGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTg < 1:726778/150‑1 (MQ=255) cAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGCCTGATGGCCCTGGCCATcggcctgg < 1:317522/150‑8 (MQ=255) tGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGgc < 1:857443/150‑1 (MQ=255) tggCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCa < 1:701899/149‑1 (MQ=255) gggtggcgggcGAGCTGGGTGAGGGGGCGGGGCAGTGGAGCGCTGGGCAGGTTGTGGTGGCGCGGCGTGGATTGCTGGGCGGCGCACGAGGGAGGGTTGGTCAGCGGGGCGGCCAGGCCGAGGGCCAGGGCCATCAGGCTGGGGCGCAgg < 2:67095/147‑1 (MQ=255) ggTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCAc < 1:870448/150‑1 (MQ=255) ttGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCCCGGCGGCGAACTAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGGTCAACGGCACgg > 1:897585/1‑150 (MQ=255) tggtggCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGa < 1:578541/131‑1 (MQ=255) tggtggCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGa > 2:578541/1‑131 (MQ=255) ggCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATgcggcg > 1:1183501/1‑150 (MQ=255) gCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGcggcgg < 1:642197/150‑1 (MQ=255) aGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTc < 2:1269304/150‑1 (MQ=255) cAGGGTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAgg > 1:418657/1‑149 (MQ=255) gTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGtgct > 1:346474/1‑150 (MQ=255) ttGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGtgctt < 2:346474/150‑1 (MQ=255) gATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCcgagc > 1:326472/1‑150 (MQ=255) tCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACg > 1:91997/1‑115 (MQ=255) tCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACg < 2:91997/115‑1 (MQ=255) ggcggcGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCt < 1:407493/149‑1 (MQ=255) ggcggcGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGAGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCt > 2:407493/1‑149 (MQ=255) ggcgAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGaaa > 2:405367/1‑150 (MQ=255) cgAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAg < 2:930946/150‑1 (MQ=255) gAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGt > 1:85807/1‑150 (MQ=255) gAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGt > 1:180154/1‑150 (MQ=255) aCAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGa > 2:429851/1‑150 (MQ=255) aGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGAGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAg < 1:1113755/150‑1 (MQ=255) ggCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAgg > 2:457501/1‑150 (MQ=255) gCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAggg > 2:271030/1‑150 (MQ=255) aGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGaaaa > 1:31853/1‑150 (MQ=255) aGCGGGGCAGCCAGGCCGATGGCCAGGGCCATAAGGACGGGGAGTCTGCTACCGTCGTCGTCACTGGACATGCCGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGaaaa > 1:24757/1‑150 (MQ=255) ggCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATAtt < 2:85807/150‑1 (MQ=255) ggCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATAtt < 2:31853/150‑1 (MQ=255) ggCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATAtt < 2:326472/150‑1 (MQ=255) ggCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATAtt < 1:429851/150‑1 (MQ=255) ccagcctgATGGCCCTGGCCATCGGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGaa > 2:1064382/8‑150 (MQ=255) cctgATGGCCCTGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAatat < 1:696095/137‑1 (MQ=255) cctgATGGCCCTGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAatat > 2:696095/4‑140 (MQ=255) tgATGGCCCTGGCCATCGGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTAttt > 1:535431/2‑150 (MQ=255) gATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTATTTa > 2:623709/1‑150 (MQ=255) aTGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAatta > 2:4590/1‑145 (MQ=255) aTGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAatta < 1:4590/145‑1 (MQ=255) ggCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGTCAGGGTGAATCTGAAAAATATTGAGAATTATTTAATg < 1:1041671/150‑1 (MQ=255) gCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTATTTAATgg < 1:457501/150‑1 (MQ=255) cAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTATTTAATGGGa > 2:921932/1‑150 (MQ=255) aGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTATTTAATGGGAt > 1:1137349/1‑150 (MQ=255) aGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTATTTAATGGGAt < 2:1137349/150‑1 (MQ=255) | GATGGCCAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTATTTAATGGGAT > NC_002947/427610‑427904 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |