Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 780,563 | G→T | 9.5% | intergenic (‑90/+32) | PP_0670 ← / ← glyA‑II | bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 780,563 | 0 | G | T | 9.5% | 123.4 / 3.0 | 42 | intergenic (‑90/+32) | PP_0670/glyA‑II | bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase |
Reads supporting (aligned to +/- strand): ref base G (22/16); new base T (2/2); total (24/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.86e-01 |
GGCCAGTACGGCGGCGAAGTAGATGGGGATCTGCCGGGTTTCGAGTTGCTCTCTGGTCAAGGTGCGGCCTGTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCTTCTCACGGACGGCGTCGATCACCGCTTCGTTGTTCAGGTCGGCCAGGATGTCGCAGATCCAGCCGGCCAGTT > NC_002947/780414‑780710 | ggCCAGTACGGCGGCGAAGTAGATGGGGATCTGCCGGGTTTCGAGTTGCTCTCTGGTCAAGGTGCGGCCTGTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTgg > 2:1225398/1‑150 (MQ=255) ggCCAGTACGGCGGCGAAGTAGATGGGGATCTGCCGGGTTTCGAGTTGCTCTCTGGTCAAGGTGCGGCCTGTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTgg < 1:387999/150‑1 (MQ=255) aGTACGGCGGCGAAGTAGATGGGGATCTGCCGGGTTTCGAGTTGCTCTCTGGTCAAGGTGCGGCCTGTGCAAAGTGGAGGAATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAGAGAGCCCGGCACTGGGCCg > 1:370416/1‑150 (MQ=255) gcggcgAAGTAGATGGGGATCTGCCGGGTTTCGAGTTGCTCTCTGGTCAAGGTGCGGCCTGTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGCAGGAAACGAAAGAGCCCGGCACTGGGCCGGGctct < 1:622373/150‑1 (MQ=255) cggcgAAGTAGATGGGGATCTGGCGGGTTTCGAGTTGCTCTCTGGTCAAGGTGCGGCCTGTGCAAAGTGGAGGTATCCGAGGCGCAGTCTTTGTACGAGGGGCGTTGCGCCTGTATTAAACGATAGAGCCCGGCACTGGGCCGGGCTCtt < 1:1053679/150‑1 (MQ=255) aGTAGATGGGGATCTGCCGGGTTTCGAGTTGCTCTCTGGTCAAGGTGCGGCCTCTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACtt < 1:1225398/150‑1 (MQ=255) ggATCTGCCGGGTTTCGAGTTGCTCTCTGGTCAAGGTGCGGCCTGTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAgc > 1:838200/1‑150 (MQ=255) gCCGGGTTTCGAGTTGCTCTCTGGTCAAGGTGCGGCCTGTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAAt < 1:1062215/150‑1 (MQ=255) gTTGCTCTCTGGTCAAGGTGCGGCCTGTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTc > 2:495052/1‑119 (MQ=255) gTTGCTCTCTGGTCAAGGTGCGGCCTGTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAACAGCCCGGCACTGGGCCGGGCTCTTTc < 1:495052/119‑1 (MQ=255) ctctCGTCAAGGTGCGGCCTGTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGc < 1:149899/150‑1 (MQ=255) tctGGTCAAGGTGCGGCCTGTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCa > 2:340125/1‑150 (MQ=255) gTCAAGGTGCGGCCTGTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGctt > 2:1190384/1‑150 (MQ=255) tCAAGGTGCGGCCTGTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGcttc < 2:838200/150‑1 (MQ=255) ggTGCGGCCTGTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGc > 2:201285/1‑150 (MQ=255) gCCTGTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATgg > 2:255508/1‑150 (MQ=255) ccTGTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGc > 2:266858/1‑150 (MQ=255) cTGTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGcc < 1:340125/150‑1 (MQ=255) aaGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCt > 1:938663/1‑150 (MQ=255) ggTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCg < 2:724398/72‑1 (MQ=255) ggTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCg > 1:724398/1‑72 (MQ=255) ttGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCTTCTCacggacg > 2:580559/1‑150 (MQ=255) ttGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTGAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCTTCTCacggacg < 2:370416/150‑1 (MQ=255) gggCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCTTCTCACGGACGGCGt > 2:785495/1‑150 (MQ=255) gTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCTTCTCACGGACGGCGTCGATCAc > 1:206636/1‑150 (MQ=255) gAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCTTCTCACGGACGGCGTCGATCACCGCTTCgttg > 2:1091826/1‑150 (MQ=255) gCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCTCCTCACGGACGGCGTCGATCACCGCTTCGTTGTTCAg < 1:266858/150‑1 (MQ=255) gcCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCTTCTCACGGACGGCGTCGATCACCGCTTCGTTGTTCAGGTCGGcc > 1:1268026/1‑150 (MQ=255) ccTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGTAGATGGCCTTGACCTTCTCACGGACGGCGTCGATCACCGCTTCGTTGTTCAGGTCGGCCa > 1:176289/1‑150 (MQ=255) ttAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCTTCTCACGGACGGCGt < 2:879069/114‑1 (MQ=255) ttAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCTTCTCACGGACGGCGt > 1:879069/1‑114 (MQ=255) aaaCGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCTTCTCANGGACGGNGTCGATCACCGCNTCGTTGTTCAGGTCGGCCAGGATGTCg < 1:1091826/150‑1 (MQ=255) gtgAAAGAGCCCGGCCCAGTGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGa > 2:331088/3‑92 (MQ=37) gtgAAAGAGCCCGGCCCAGTGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGa < 1:331088/90‑1 (MQ=37) gAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTgcc < 1:185582/91‑3 (MQ=255) gAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGAc > 2:185582/1‑91 (MQ=255) aaGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCTTCTCACGGACGGCGTCGATCACCGCTTCGTTGTTCAGGTCGGCCAGGATGTCGCAGATc < 1:201285/150‑1 (MQ=255) gagCCCGGCCCAGTGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGTAGCTTCTTGCAGATGGCCTTGACCTTCTCACGGACGGCGTCGATCACCGCTTCgtt < 2:829891/120‑1 (MQ=255) gagCCCGGCCCAGTGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCTTCTCACGGACGGCGTCGATCACCGCTTCgtt > 1:829891/1‑120 (MQ=255) gagCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCTTCTCACGGACGGCGTCGATCACCGCTTCGTTGTTCAGGTCGGCCAGGATGTCGCAGATCCa > 1:723930/1‑150 (MQ=255) ccGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCTTCTCACGGACGGCGTCGATCACCGCTTCGTTGTTCAGGTCGGCCAGGATGTCGCAGATCCAGCCg > 2:663634/1‑150 (MQ=255) cACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCTTCTCACGGACGGCGTCGATCACCGCTTCGTTGTTCAGGTCGGCCAGGATGTCGCAGATCCAGCCGGCCa < 1:255508/150‑1 (MQ=255) tGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGCCCTTCTCACGGACGGCGTCGATCACCGCTTCGTTGTTCAGGTCGGCCAGGATGTCGCAGATCCAGCCGGCCAGtt > 1:1111338/1‑150 (MQ=255) tGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGGTTCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCATCTCACGAACGGCGTCGATCACCGCTTCGTTGTTCAGGTCGGCCAGGATGTCGCAGATCCAGCCGGCCAGtt > 1:425699/1‑150 (MQ=255) | GGCCAGTACGGCGGCGAAGTAGATGGGGATCTGCCGGGTTTCGAGTTGCTCTCTGGTCAAGGTGCGGCCTGTGCAAAGTGGAGGTATTGGGGGCGCAGTCTTTGTACGAGGGGCGGTGCGCCTGTATTAAACGAAAGAGCCCGGCACTGGGCCGGGCTCTTTCACTTTAGGCAAGCGCCAATCAGTTGCCGTAAACCGGCAGCTTCTTGCAGATGGCCTTGACCTTCTCACGGACGGCGTCGATCACCGCTTCGTTGTTCAGGTCGGCCAGGATGTCGCAGATCCAGCCGGCCAGTT > NC_002947/780414‑780710 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |