Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 971,682 | A→G | 9.6% | intergenic (+34/‑30) | yajC → / → secD | protein translocase subunit YajC/protein translocase subunit SecD |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 971,682 | 0 | A | G | 9.6% | 105.1 / 2.7 | 42 | intergenic (+34/‑30) | yajC/secD | protein translocase subunit YajC/protein translocase subunit SecD |
Reads supporting (aligned to +/- strand): ref base A (18/19); new base G (2/2); total (20/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.76e-01 |
TCAAGGTTTCCGATGACTTCGTGGTGCTGGAAGTGTCCGACACTGTCGAGCTGAAGTTCCAGAAGGGTGCCATTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAATATGCACTGATCGTGCTGGTACTGGTGGTCGGTTTCATTTATTCCGCTCCCAACCTCTACCCGGATGACCCGGCGGTACAGATCAGCGGT > NC_002947/971536‑971828 | tCAAGGTTTCCGATGACTTCGTGGTGCTGGAAGTGTCCGACACTGTCGAGCTGAAGTTCCAGAAGGGTGCCATTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAAcgc < 2:738869/150‑1 (MQ=255) gTTTCCGATGACTTCGTGGTGCTGGAAGTGTCCGACACTGTCGAGCTGAAGTTCCAGAAGGGTGCCATTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGCCGGGGCGCGCACCGCGcccc < 2:983272/150‑1 (MQ=255) tCCGATGACTTCGTGGTGCTGGAAGTGTCCGACACTGTCGAGCTGAAGTTCCAGAAGGGTGCCATTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGTTGCGCGCCCcgac < 2:1260503/150‑3 (MQ=255) ccGATGACTTCGTGGTGCTGGAAGTGTCCGACACTGTCGAGCTGAAGTTCCAGAAGGGTGCCATTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGt < 1:610044/150‑1 (MQ=255) gatctaCTTCGTGGTGCTGGAAGTGTCCGACACTGTCGAGCTGAAGTTCCAGAAGGGTGCCATTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTAGGGGCGCGCAACGCGCCCCGCGTc < 2:542951/145‑1 (MQ=255) cTTCGTGGTGCTGGAAGTGTCCGACACTGTCGAGCTGAAGTTCCAGAAGGGTGCCATTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAAc < 1:571395/150‑1 (MQ=255) cTTCGTGGTGCTGGAAGTGTCCGACACTGTCGAGCAAAAATACCACCCGTAAATCATTGCTGCGACCCTGCTAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTAGGGGCGCGCAACGCGCCCCGCGTCtagatc > 1:542951/1‑145 (MQ=255) ttCGTGGTGCTGGAAGTGTCCGACACTGTCGAGCTGAAGTTCCAGAAGGGTGCCATTGCTGCGACCATGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACg > 2:712809/1‑150 (MQ=255) tGGAAGTGTCCGACACTGTCGAGCTGAAGTTCCAGAAGGGTGCCATTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGa < 1:885550/150‑1 (MQ=255) gtgtCCGACACTGTCGAGCTGAAGTTCCAGAAGGGTGCCATTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTg < 2:775762/150‑1 (MQ=255) gAAGTTCCAGAAGGGTGCCATTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGggcggc < 2:672300/121‑1 (MQ=255) gAAGTTCCAGAAGGGTGCCATTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGggcggc > 1:672300/1‑121 (MQ=255) aaGTTCCAGAAGGGTGCCATTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGaaa > 1:1183990/1‑150 (MQ=255) gTTCCAGAAGGGTGCCATTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAata > 2:604353/1‑150 (MQ=255) ttCCAGAAGGGTGCCATTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAatat > 1:197277/1‑150 (MQ=255) gggTGCCATTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAatat > 1:1245503/1‑142 (MQ=255) gggTGCCATTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAatat < 2:1245503/142‑1 (MQ=255) aTTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGGCGGGGCGCGTTGCGCGCCCcgact > 2:721106/1‑85 (MQ=37) aTTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGGCGGGGCGCGTTGCGCGCCCcgact < 1:721106/88‑4 (MQ=37) gctgcGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAATATGCACTGATCGTGCTGGTa > 1:1063396/1‑150 (MQ=255) tgcGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAATATGCACTGATCGTGCTGGTACt > 2:478352/1‑150 (MQ=255) cGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAATATGCACTGATCGTGCTGGTACtgg < 2:197277/150‑1 (MQ=255) cccTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCACGCACCTTGAACGGGCGGCGTGATGATGAAAAAAGATCTGCTGTGGAAATATGCACTGATCGTGCTGGTACtggtgg > 1:726013/1‑150 (MQ=255) ccAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAATATGCACTGATCGTGCTGGTACTGGTGGTCGGt < 2:1063396/150‑1 (MQ=255) gCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAATATGCACTGATCGTGCTGGTACTGGTGGTCGGTTTCATTTATTc < 2:1183990/150‑1 (MQ=255) ggCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAATATGCACTGATCGTGCTGGTACTGGTGGTCGGTTTCATTTATTCCGCTcc > 1:994675/1‑150 (MQ=255) aGTTACCGGTTTTATTTTCCAGGCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAATATGCACTGATCGTGCTGGTACTGGTGGTCGGTTTCATTTATTCCGCTCCCAACCTCTa < 2:726013/150‑1 (MQ=255) ccGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCct < 2:1220182/77‑1 (MQ=255) ccGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCct > 1:1220182/1‑77 (MQ=255) cGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAat < 2:1185103/71‑1 (MQ=255) cGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAat > 1:1185103/1‑71 (MQ=255) ggTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAATATGCACTGATCGTGCTGGTACTGGTGGTCGGTTTCATTTATTCCGCTCCCAACCTCTACCCGGAt < 1:712809/150‑1 (MQ=255) ttttATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACGAATATCCTCTGTGGAAATATGCa > 1:731327/1‑88 (MQ=255) ttttATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACGAATATCCTCTGTGGAAATATGCa < 2:731327/88‑1 (MQ=255) ttATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAATATGCACTGATCGTGCTGGTACTGGTGGTCGGTTTCATTTATTCCGCTCCCAACCTCTACCCGGATGAcc > 1:500568/1‑150 (MQ=255) aGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAATATGCACTGATCGTGCTGGTACTGGTGGTCGGTTTCATTTATTCCGCTCCCAACCTCTACCCGGATGACCCGGCGGTAc > 2:1088680/1‑150 (MQ=255) cgcGGGGCGCGTTGCGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAATATGCACTGATCGTGCTGGTACTGGTGGTCGGTTTCATTTATTCCGCTCCCAACCTCTACCCGGATGACCCGGCGGTACa > 1:352418/3‑150 (MQ=255) ggggCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAATATGCACTGATCGTGCTGGTACTGGTGGTCGGTTTCATTTATTCCGCTCCCAAcc < 1:81108/122‑1 (MQ=255) ggggCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAATATGCACTGATCGTGCTGGTACTGGTGGTCGGTTTCATTTATTCCGCTCCCAAcc > 2:81108/1‑122 (MQ=255) gggCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCtgt < 1:1038867/61‑1 (MQ=255) gggCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCtgt > 2:1038867/1‑61 (MQ=255) gcAACCCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCGTCTGTGGAAATATGCACTGATCGTGCTCCTACTGGTGGTGGGGGTCATTTATTCCGCTCCCAACGCCTACCCGGATGACCCGGCGGTACAGATCAGCGGt < 1:478352/150‑1 (MQ=255) | TCAAGGTTTCCGATGACTTCGTGGTGCTGGAAGTGTCCGACACTGTCGAGCTGAAGTTCCAGAAGGGTGCCATTGCTGCGACCCTGCCAAAAGGTACGCTCAAGGCTATCTGAGTTACCGGTTTTATTTTCCAGTCGGGGCGCGCAACGCGCCCCGCGTCTTGAACGGGCGGCGTGATGCTGAACAAATATCCTCTGTGGAAATATGCACTGATCGTGCTGGTACTGGTGGTCGGTTTCATTTATTCCGCTCCCAACCTCTACCCGGATGACCCGGCGGTACAGATCAGCGGT > NC_002947/971536‑971828 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |