| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,244,376 | C→T | 12.5% | G39S (GGT→AGT) ‡ | rnt ← | ribonuclease T |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,244,376 | 0 | C | T | 12.5% | 135.0 / 8.9 | 56 | G39S (GGT→AGT) ‡ | rnt | ribonuclease T |
| Reads supporting (aligned to +/- strand): ref base C (25/24); new base T (4/3); total (29/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 | |||||||||||
TGCGGCCGGCTCGATGTTGGCGCCCTCGAACGGCTCCACTCGGTGGAAGTAGGTATGTTCGGGGAACAGGAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCTTCGTAAAGGTCTTCGCTCACGCGTTTTTCTCCAGCAGGCGCCAGCGCAGTTTTTC > NC_002947/1244233‑1244525 | tccggccggcTCGATGTTGGCGCCCTCGAACGGCTCCACTCGGTGTAAGTAGGTATGTTCGGGGAACAGGAAACCTTTCCCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTc < 2:10869/148‑1 (MQ=255) ggccggcTCGATGTTGGCGCCCTCGAACGGCTCCACTCGGTGGAAGTAGGTATGTTCGGGGAACAGGAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGACACCACCg > 1:385911/1‑142 (MQ=255) ggccggcTCGATGTTGGCGCCCTCGAACGGCTCCACTCGGTGGAAGTAGGTATGTTCGGGGAACAGGAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCg < 2:385911/142‑1 (MQ=255) cggcTCGATGTTGGCGCCCTCGAACGGCTCCACTCGGTGGAAGTAGGTATGTTCGGGGAACAGGAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATc < 2:755828/150‑1 (MQ=255) cTCGATGTTGGCGCCCTCGAACGGCTCCACTCGGTGGAAGTAGGTATGTTCGGGGAACAGGAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGt < 1:884665/138‑1 (MQ=255) cTCGATGTTGGCGCCCTCGAACGGCTCCACTCGGTGGAAGTAGGTATGTTCGGGGAACAGGAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGt > 2:884665/1‑138 (MQ=255) aTGTTGGCGCCCTCGAACGGCTCCACTCGGTGGAAGTAGGTATGTTCGGGGAACAGGAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTATTGAAACCACCGGTTTCAACATCCACCACg > 2:317396/1‑150 (MQ=255) gcgcCCTCGAACGGCTCCACTCGGTGGAAGTAGGTATGTTCGGGGAACAGGAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGc > 1:1196486/1‑150 (MQ=255) tCCACTCGGTGGAAGTAGGTATGTTCGGGGAACAGGAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCGGTGGTTTCAACa < 1:114362/120‑1 (MQ=255) tCCACTCGGTGGAAGTAGGTATGTTCGGGGAACAGGAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCGGTGGTTTCAACa > 2:114362/1‑120 (MQ=255) tCCACTCGGTGGAAGTAGGTATGTTCGGGGAACAGGAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGa > 1:507998/1‑130 (MQ=255) tCCACTCGGTGGAAGTAGGTATGTTCGGGGAACAGGAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGa < 2:507998/130‑1 (MQ=255) cTCGGTGGAAGTAGGTATGTTCGGGGAACAGGAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCt > 2:1063641/1‑150 (MQ=255) tAGGTATGTTCGGGGAACAGGAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCggg < 2:596560/150‑1 (MQ=255) tATGTTCGGGGAACAGGAAACCTTTCTCGTCAATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGtt > 2:164905/1‑95 (MQ=255) tATGTTCGGGGAACAGGAAACCTTTCTCGTCAATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGtt < 1:164905/95‑1 (MQ=255) gTTCGGGGAACAGGAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAg < 2:308575/150‑1 (MQ=255) ttCGGGGAACAGGAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAgg > 2:825747/1‑150 (MQ=255) gAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTg > 2:537905/1‑132 (MQ=255) gAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTg < 1:537905/132‑1 (MQ=255) ccTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTgg < 1:416537/150‑1 (MQ=255) ccTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTgg < 2:408531/150‑1 (MQ=255) tttCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGgt < 1:230575/150‑1 (MQ=255) cGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGTTGCTGCCTTGGGTGTCCa > 1:260346/1‑150 (MQ=255) gTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAg < 2:589784/150‑1 (MQ=255) tCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGTTGCTGCCTTGGGTGTCCAgg < 2:260346/150‑1 (MQ=255) aTGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCcgc > 2:168942/1‑94 (MQ=255) aTGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCcgc < 1:168942/94‑1 (MQ=255) gCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGgtcgtc > 2:840380/1‑150 (MQ=255) cAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCtt < 2:1196486/150‑1 (MQ=255) aTGGTGACGGCGACAATTTCCAGCAATGCATCGGTAGCGCTGTGGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCAACGGTTCGCGAAGACCGCGGCTGCCTTGGGTGTCCAGGTCGTCTTCg > 2:920291/1‑150 (MQ=255) tGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGgtcgt > 2:737595/1‑141 (MQ=255) tGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGgtcgt < 1:737595/141‑1 (MQ=255) gACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCTTCGTAAAg < 1:920291/150‑1 (MQ=255) cAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATc > 2:646547/1‑85 (MQ=255) cAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATc < 1:646547/85‑1 (MQ=255) cAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCg > 2:456325/1‑93 (MQ=255) cAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCg < 1:456325/93‑1 (MQ=255) cAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGgtc < 1:356951/123‑1 (MQ=255) cAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGgtc > 2:356951/1‑123 (MQ=255) cATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCTTCGTAAAGGTCTTCGCTCACGCGTTTTtctc > 1:550483/1‑150 (MQ=255) aTCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCTTCGTAAAGGTCTTCGCTCACGCGTTTTTCTcc > 1:913766/1‑150 (MQ=255) gTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCTTc < 2:1029304/116‑1 (MQ=255) gTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCTTc > 1:1029304/1‑116 (MQ=255) gTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGAACATAGCCGCGGAAGCGCCCGGCCATCGGATGGCGAGGACCACTGCCGCCGTGGGTGTCCAGGTCGGCTTCGTGGAGGGCTTCAGTCACGGGGTTTTCTCcagca > 2:447568/1‑150 (MQ=255) gcgcTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCTTCGTAAAGGTCTTCGCTCACGCGTTTTTCTCCAGCAGgc < 1:1063641/150‑1 (MQ=255) atGTTGAAACCGGTGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCTTCGTAAAGGTCTTCGCTCACGCGTTTTTCTCca > 2:958124/2‑141 (MQ=255) atGTTGAAACCGGTGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCTTCGTAAAGGTCTTCGCTCACGCGTTTTTCTCca < 1:958124/140‑1 (MQ=255) tGTTGAAACCGGTGGTTTCAACATCCACCACGGCCGGCAGATATCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCgctgc < 1:1221520/84‑1 (MQ=38) tGTTGAAACCGGTGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCgctgc > 2:1221520/1‑84 (MQ=39) tGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCTTCGTAAAGGTCTTCGCTCACGCGTTTTTCTCCAGCAGGCGCCa > 2:1149681/1‑150 (MQ=255) tGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAACGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCTTCGTAAAGGTCTTCGCTCACGCGTTTTTCTCCAGCAGGCGCCa > 2:135994/1‑150 (MQ=255) gTTGAAACCGGTGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCTTCGTAAAGGTCTTCGCTCACGCGTTTTTCTCCAGCAGGCGCCAg > 2:1111233/1‑150 (MQ=255) ttGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCTTCGTAAAGGTCTTCGCTCACGCGTTTTTCTCCAGCAGGCGCCAgc < 2:60747/150‑1 (MQ=255) ttGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCTTCGTAAAGGTCTTCGCTCACGCGTTTTTCTCCAGCAGGCGCCAgc > 1:60747/1‑150 (MQ=255) aaaCCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCTTCGTAAAGGTCTTCGCTCACGCGTTTTTCTCCAGCAGGCGCCAGCGCa > 2:1113788/1‑150 (MQ=255) cGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGACGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCTTCGTAAAGGTCTTCGCTCACGCGTTTTTCTCCAGCAGGCGCCAGCGCAGtttttg < 1:1149681/150‑2 (MQ=255) | TGCGGCCGGCTCGATGTTGGCGCCCTCGAACGGCTCCACTCGGTGGAAGTAGGTATGTTCGGGGAACAGGAAACCTTTCTCGTCCATGCCAATGGTGACGGCGGCAATTTCCAGCAATGCATCGGTAGCGCTGTTGAAACCACCGGTTTCAACATCCACCACGACCGGCAGATAGCCGCGGAAGCGCTCGGCCATCGGGTGGCGAGGACCGCTGCTGCCTTGGGTGTCCAGGTCGTCTTCGTAAAGGTCTTCGCTCACGCGTTTTTCTCCAGCAGGCGCCAGCGCAGTTTTTC > NC_002947/1244233‑1244525 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |