| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,822,230 | G→T | 8.8% | intergenic (+30/+28) | PP_mr22 → / ← fdxA | PrrB_RsmZ ncRNA/ferredoxin 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,822,230 | 0 | G | T | 8.8% | 168.1 / 4.1 | 57 | intergenic (+30/+28) | PP_mr22/fdxA | PrrB_RsmZ ncRNA/ferredoxin 1 |
| Reads supporting (aligned to +/- strand): ref base G (25/26); new base T (3/2); total (29/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.46e-01 | |||||||||||
GCACAGGCTTTCAGGATGAAGGCCAGGGACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGCCAGCTCGGCGTTCAGCTCGAT > NC_002947/1822086‑1822377 | gCACAGGCTTTCAGGATGAAGGCCAGGGACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAggg < 2:910662/150‑1 (MQ=255) tttCAGGATGAAGGGCAGTTACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCTTCGGGCCtttttt < 2:553826/150‑2 (MQ=255) tttCAGGATGAAGGCCAGGGACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGTGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTc < 1:458568/150‑1 (MQ=255) tttCAGGATGAAGGCCAGGGACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCTTCGGGCCtttttt < 1:751338/150‑2 (MQ=255) aGGCCAGGGACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGgcg > 1:21654/1‑150 (MQ=255) aGGGACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGGATACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATc > 1:479192/1‑150 (MQ=255) gggACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCa < 1:581211/150‑1 (MQ=255) gggACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCa < 2:1102972/150‑1 (MQ=255) gggACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGCCTCGCGGTCAATGTTGTTGCCCGTAGGAACCCACAAACGGCGCGAGGGTCCTCCTTCGCGTCTGGGCGCTATCa > 1:1186264/1‑150 (MQ=255) ggACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAg > 1:711427/1‑150 (MQ=255) tCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTATGGAAACAAATCTGGGCGGGTCAAATCGCCCCTTTTTTTGACCGTAGGAAAACACACGGGCCCCGCAGGGCGTTTTTCGCGTCTGGTGGCTATCCGCGCTc > 1:60579/1‑150 (MQ=255) gCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCACGTCTGGGCGCTATCAGCCCTccc > 2:274273/1‑149 (MQ=255) cAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAg > 2:115582/1‑150 (MQ=255) aGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAg < 1:433859/150‑1 (MQ=255) gatgatGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGc > 2:1043735/1‑150 (MQ=255) tgatgTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCtt < 1:115582/150‑1 (MQ=255) gatgTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTg < 1:727310/150‑1 (MQ=255) gACAACCAGGGACTACGGCAAAAACTGTGGCCGGGTCAAAGCGCGCCTTTTGTTGTTCGTGGGAAAGCAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCAt > 2:978969/1‑150 (MQ=255) cAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCAttc < 2:1186264/150‑1 (MQ=255) aaGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCAttct > 2:351714/1‑150 (MQ=255) gCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCa < 2:1051761/105‑1 (MQ=255) gCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCa > 1:1051761/1‑105 (MQ=255) gCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCAttcttc < 2:304882/150‑1 (MQ=255) cAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGGGAGCAGCGCTCCAGGTCGGAAAGCTAGCCAGGCTTGC‑AATCCCATTCTTCa > 1:491184/1‑150 (MQ=255) cAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCa < 2:514174/150‑1 (MQ=255) gggACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGc < 1:274273/150‑1 (MQ=255) aCTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCa > 1:1135940/1‑145 (MQ=255) aCTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCa < 2:1135940/145‑1 (MQ=255) aCTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTc > 1:970367/1‑150 (MQ=255) ggAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCa < 2:924328/150‑1 (MQ=255) gggCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTAc < 2:711427/150‑1 (MQ=255) gggTCAAACCGCCCCTTTTTTTGCCCGTAGGAGAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTc < 2:646332/150‑1 (MQ=255) cAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGAAACATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTg < 1:1043735/150‑1 (MQ=255) aCCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGata > 2:1229870/1‑150 (MQ=255) ccGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGCCCGGCGGAGCGTGATCAGGCTCGGTgtgaa > 2:1238061/1‑146 (MQ=255) gCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTa < 1:1238061/150‑1 (MQ=255) ccccTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGTAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAg < 2:433892/150‑1 (MQ=255) ccccTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAg < 2:479192/150‑1 (MQ=255) cTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGcc > 1:547586/1‑150 (MQ=255) gCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTcc < 2:547586/150‑1 (MQ=255) ccGTAGGAAAACAAAAAAGGCCCAACGGGAAAATTTCGGCACTGGGCGCTGTCATCTCTCTAGGTCGGCAATCTTCCCCCGC‑CGCTTCTGGTGGCCCTTGGCGTCCGGCAGGGCGTCCTTACGCTCGGTGAAATTAGGCTAGATTTCCGc > 1:611595/1‑150 (MQ=255) gAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGc < 1:42938/108‑1 (MQ=255) gAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGc > 2:42938/1‑108 (MQ=255) gAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAgg < 2:1135993/132‑1 (MQ=255) gAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAgg > 1:1135993/1‑132 (MQ=255) gAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGc > 2:352684/1‑144 (MQ=255) gAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGc < 1:352684/144‑1 (MQ=255) gAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGCCAGCTc > 2:1080213/1‑150 (MQ=255) agacgcgaaaaaGGCCCTTCGGGCCTTTTTTGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGCCAGCTc > 1:142457/8‑150 (MQ=255) aaCAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGCCAGCTCGGc > 2:479816/1‑150 (MQ=255) gaaaaaGGCCCTTCGGGCCTTTTTTGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGCCAGCTCGGCGtt > 2:692428/2‑150 (MQ=255) aaaaGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGCCAGCTCGGCGTTCa > 1:974063/1‑150 (MQ=255) aaGGCCCTTCGGGCCTTTTTCGCGGCTGGGCGCTATCAGCGCTCCAGGTCGCCCCTTATCCCAGGCTTGG‑AATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTAACGCCCGGTGATATCAGGCCAGATTTCCCCGAGCTCGGCGCTCacc > 2:369696/1‑148 (MQ=255) cccGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGCCAGCTCGGCGTTCAGCTCGa < 1:1080213/150‑1 (MQ=255) ccGAAGGGCCTTTTTTTTTTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGCCAGCTCGGCTTTCAGCTCGAt > 2:116418/1‑150 (MQ=255) ccGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTa < 1:120051/115‑1 (MQ=255) ccGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTa > 2:120051/1‑115 (MQ=255) | GCACAGGCTTTCAGGATGAAGGCCAGGGACATCGCAAGAAGCGATTTCATCAGGATGATGTTTGGGACAAGCAGGGACTACGGAAAAAAATGTGGGCGGGTCAAACCGCCCCTTTTTTTGCCCGTAGGAAAACAAAAAAGGCCCGAAGGGCCTTTTTCGCGTCTGGGCGCTATCAGCGCTCCAGGTCGGCAATCTTGCCAGGCTTGC‑CATCCCATTCTTCAGCGTCCGGCAGGGCGTCCTTACGCTCGGTGATATTAGGCCAGATTTCCGCCAGCTCGGCGTTCAGCTCGAT > NC_002947/1822086‑1822377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |