Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,852,269 | C→T | 75.5% | A438V (GCC→GTC) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,852,269 | 0 | C | T | 75.5% | 87.1 / 28.2 | 53 | A438V (GCC→GTC) | relA | ATP:GTP 3'‑pyrophosphotransferase |
Reads supporting (aligned to +/- strand): ref base C (7/6); new base T (21/19); total (28/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.83e-01 |
AGGTGCTGGAGTGGCACGAAGAGCTGGGCGACATCGGTGGCCTGGCCGAGCAGTTGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGCCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCAGGTGGAGATCATCACCAGCAAGCACGGCAACCCCAGCCGTGACTGGTTGAA > NC_002947/1852122‑1852416 | aGGTGCTGGAGTGGCACGAAGAGCTGGGCGACATCGGTGGCCTGGCCGAGCAGTTCCTTGGCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCt < 1:978962/150‑1 (MQ=255) tGCTGGAGTGGCACGAAGAGCTGGGCGACATCGGTGGCCTGGCCGAGCAGTTGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTAcc < 1:659225/150‑1 (MQ=255) tGCTGGAGTGGCACGAAGAGCTGGGCGACATCGGTGGCCTGGCCGAGCAGTTGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTAcc > 1:1286468/1‑150 (MQ=255) ggAGTGGCACGAAGAGCTGGGCGACATCGGTGGCCTGGCCGAGCAGTTGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGt < 1:969212/150‑1 (MQ=255) gCACGAAGAGCTGGGCGACATCGGTGGCCTGGCCGAGCAGTTGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAATGCGCCACGCCATTGGACTTCGTCTACCGCGTGCacac > 2:527681/1‑150 (MQ=255) gCACGAAGAGCTGGGCGACATCGGTGGCCTGGCCGAGCAGTTGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGCCCACCGCGTGCacac > 2:349838/1‑150 (MQ=255) aCGAAGAGCTGGGCGACATCGGTGGCCTGGCCGAGCAGTTGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCg > 1:177929/1‑150 (MQ=255) aCGAAGAGCTGGGCGACATCGGTGGCCTGGCCGAGCAGTTGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCg > 1:257224/1‑150 (MQ=255) aCGAAGAGCTGGGCGACATCGGTGGCCTGGCCGAGCAGTTGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGCCCACCGCGTGCACACCg > 1:413461/1‑150 (MQ=255) cTGGGCGACATCGGTGGCCTGGCCGAGCAGTTGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGc < 2:132315/150‑1 (MQ=255) cTGGGCGACATCGGTGGCCTGGCCGAGCAGTTGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGCCCACCGCGTGCACACCGAGATCGGc < 1:131784/150‑1 (MQ=255) gggCGACATCGGTGGCCTGGCCGAGCAGTTGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCGCAGGCTCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCca < 1:732741/150‑1 (MQ=255) aCATCGGTGGCCTGGCCGAGCAGTTGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACaatt < 2:1216293/150‑3 (MQ=255) ctggccGAGCAGTTGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGcgcg > 1:62680/1‑150 (MQ=255) cGAGCAGTTGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGAt > 1:737135/1‑150 (MQ=255) gCAGTTGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGAGCGAAGATCaa > 1:380131/1‑150 (MQ=255) tGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGcc < 1:932991/150‑1 (MQ=255) gTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCg < 2:117511/112‑1 (MQ=255) gTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCg > 1:117511/1‑112 (MQ=255) cATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGcc > 1:524742/1‑150 (MQ=255) aTCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGCCCACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCg > 2:650507/1‑150 (MQ=255) ccTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGCCCACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAAc < 1:575957/150‑1 (MQ=255) cGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGCCCACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGc < 1:1193519/150‑1 (MQ=255) ttATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCa < 2:62680/150‑1 (MQ=255) tgtgTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGAc < 2:257224/150‑1 (MQ=255) tgtTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTg > 2:239214/1‑150 (MQ=255) ttCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGc < 2:380131/150‑1 (MQ=255) ttCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGCCCACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGc < 1:650507/150‑1 (MQ=255) cccccGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGCAGAGCAACGGCCGTATCGTCCCGCACAACTACAACCTCCACACTTGCCAGc > 2:437930/1‑150 (MQ=255) ccccGGCGGCCACGCCATCGACCTGCCCAAAGGCGCCCCGCCATTGGACTTCGCCCACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCCCGACCAGCAACGGCCGTCTCGTGCCCCCGCACCACAGCCTGCACCCTGTCGAGcg > 2:381158/1‑149 (MQ=255) ccccGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCa > 2:221347/1‑150 (MQ=255) ccGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCa < 1:13815/148‑1 (MQ=255) ccGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCa > 2:13815/1‑148 (MQ=255) ccGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGCCCACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCAgg > 2:580375/1‑150 (MQ=255) cGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCAGGt < 1:239214/150‑1 (MQ=255) ccACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATc > 2:1146866/1‑106 (MQ=255) ccACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATc < 1:1146866/106‑1 (MQ=255) gCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGCCCACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCAGGTGGAGatcatc > 2:507769/1‑150 (MQ=255) cATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCAGGTGGAGATCATCAc > 2:415159/1‑150 (MQ=255) aCCTGCCCAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCAGGTGGAGATCATCACCagca > 2:1155053/1‑150 (MQ=255) cAAAGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATAGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCAGGTGGATATCATCACCAGCAAGCACgg < 1:712715/150‑1 (MQ=255) aaaGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCGGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCAGGTGGAGATCATCACCAGCAAGCACGGc > 1:80467/1‑150 (MQ=255) aaaGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTg < 1:876533/90‑1 (MQ=255) aaaGGCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTg > 2:876533/1‑90 (MQ=255) ggCGCCACGCCATTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCAGGTGGAGATCATCACCAGCAAGCACGGCAAc < 2:737135/150‑1 (MQ=255) gccacgccaTTGGACTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCAGGTGGAGATCATCACCAGCAAGCACGGCAAcccc > 2:1062472/1‑150 (MQ=255) aTTGGACTTCGCCCACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCAGGTGGAGATCATCACCAGCAAGCACGGCAACCCCAGCCGTGa > 1:960445/1‑150 (MQ=255) ggACTTCGCCCACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCAGGTGGAGATCATCACCAGCAAGCACGGCAACCCCAGCCGTGACTg < 1:507769/150‑1 (MQ=255) cTTCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCAGGTGGAGATCATCACCAGCAAGCACGGCAACCCCAGCCGTGACTGGtt < 1:527681/150‑1 (MQ=255) ttCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAg > 1:1273196/1‑99 (MQ=255) ttCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAg < 2:1273196/99‑1 (MQ=255) ttCGTCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCAGGTGGAGATCATCACCAGCAAGCACGGCAACCCCAGCCGTGACTGGTTg > 1:662382/1‑150 (MQ=255) cGCCCACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAACAGCTGATGACGTTCACCAGCAAGCACGGCAACCCCAGCCGTGACTGGTTGaa < 1:349838/150‑1 (MQ=255) | AGGTGCTGGAGTGGCACGAAGAGCTGGGCGACATCGGTGGCCTGGCCGAGCAGTTGCGGGTCGACATCGAGCCTGACCGGGTTTATGTGTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGCCATTGGACTTCGCCTACCGCGTGCACACCGAGATCGGCCACAACTGCCGCGGCGCGAAGATCAACGGCCGTATCGTGCCGCTGAACTACAGCCTGCAGACTGGCGAGCAGGTGGAGATCATCACCAGCAAGCACGGCAACCCCAGCCGTGACTGGTTGAA > NC_002947/1852122‑1852416 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |