| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,095,235 | G→C | 11.2% | intergenic (‑243/+74) | htpX ← / ← alaA | protease HtpX/glutamate‑pyruvate aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,095,235 | 0 | G | C | 11.2% | 101.1 / 6.0 | 37 | intergenic (‑243/+74) | htpX/alaA | protease HtpX/glutamate‑pyruvate aminotransferase |
| Reads supporting (aligned to +/- strand): ref base G (18/14); new base C (2/2); total (21/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.95e-01 | |||||||||||
TACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGT‑CGAACCTCTCGTAGCCCCCGGCGCCCCCGTCGAACCCTACTGCGAATAACCCTTCAGGAAATTGCCGATCCGGCCAATTGCCGCTTCCAGGTCATCCACC > NC_002947/2095090‑2095372 | tACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCgcgggcgg < 2:290659/150‑1 (MQ=255)tACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCgcgggcgg < 1:705370/150‑1 (MQ=255) gTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTACGAAACATTCGGCTTGGGGGCTGTGTCTCGGCCGGTGGGTGTTTCCGATATGTGGTGGGGGGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATc < 1:996987/150‑1 (MQ=37) gCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTc < 2:1218055/141‑1 (MQ=255) gCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTc > 1:1218055/1‑141 (MQ=255) cAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGcc < 1:992205/150‑1 (MQ=255) gCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCccaccacca > 1:111170/1‑150 (MQ=255) gTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATATGCGCCccacc > 2:1284940/1‑144 (MQ=255) gTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATATGCGCCccacc < 1:1284940/144‑1 (MQ=255) tgGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGgcgc > 1:203170/1‑117 (MQ=255) tgGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGgcgc < 2:203170/117‑1 (MQ=255) tgGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTc > 1:1068371/1‑119 (MQ=255) tgGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTc < 2:1068371/119‑1 (MQ=255) gATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGG‑CGAAcc > 2:368018/1‑150 (MQ=255) tAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGGGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGT‑CGAACctc < 2:278285/150‑1 (MQ=255) ttGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGT‑CGAACCTCTCGTAGc > 1:16803/1‑150 (MQ=255) aGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCCACAACCCCCCGT‑CGGAACTCTCGTGGccccc > 1:1204044/1‑150 (MQ=38) aaGAAACATTCGGATTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTgc > 1:1277881/1‑103 (MQ=255) aaGAAACATTCGGATTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTgc < 2:1277881/103‑1 (MQ=255) gAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGT‑CGAACCTCTCGTAGCCCCCGGCGccccc > 2:876246/1‑150 (MQ=255) gAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGT‑CGAACCTCTCGTAGCCCCCGGCGccccc < 1:393491/150‑1 (MQ=255) gAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCCC‑CGAACCCCTCCTAGCCCCCCGCGccccc > 2:1044488/1‑150 (MQ=39) aTTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCGCCACCACCACCCCCGCGT‑CCAACCTCTCCTAGCCCCCGGCGCCCCCCTCgg > 2:291157/1‑149 (MQ=255) aTTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCCAGAGCAGCGCTCGATCTGCGCCCCCACCCCCCCCACGCGC‑CCAACCTCCCCGAGGCCCCCGCGCCCCCgcccc > 1:1185623/1‑146 (MQ=255) ttCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGT‑CGAACCTCTCGTAGCCCCCGGCGCCCCCGTCGaa < 2:111170/150‑1 (MQ=255) ggCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCAACCCCGCGTGCGAACCT‑TCGTAGTGCCCCGCGCCCCCGTCGAAccc > 1:963959/1‑150 (MQ=38) tGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGT‑CGAACCTCTCGTAGCCCCCGGCGCCCCCGTCGAACCCTACTGCGAATa > 2:1099796/1‑150 (MQ=255) aaGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCCCCCCCCCCCCCT‑CGGAACCCTCCTAGCCCCCCGCGCCCCCCGCGAACCCTCCTGCGCATAAccccc > 2:1235318/1‑148 (MQ=37) aGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGT‑CGAACCTCTCGTAGCCCCCGGCGCCCCCGTCGAACCCTACTGCGAATAACCCTTc < 1:1099796/150‑1 (MQ=255) gtgtTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGT‑CGAACCtctc > 1:98819/1‑95 (MQ=255) gtgtTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGT‑CGAACCtctc < 2:98819/95‑1 (MQ=255) tgtTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGT‑CGAACCTCTCGTAGCCCCCGGCGCCCCCGTCGAACCCTACTGCGAATAACCCTTCAGGAAATTGcc < 2:1185623/150‑1 (MQ=255) tgtTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCCTGGGCGGCGCTCGATCTGCGCCCCAGCACCACCCCCGCGT‑CGAACCACTCGTAGCCCCCGGCGCCCCCGTCGAACCCTACTGCGGATAACCCTTCAGGGAATTGcc > 1:667178/1‑150 (MQ=39) ccGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGC‑CGCACCTCCCGTAGCCCCCCGCGCCCCCGTCGAACCCTACTGCGCATAACCCTTCAGGAACTTGCCGATCCg > 2:325317/1‑150 (MQ=39) tgtgAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCCCCACCACCCCCGCGT‑CGAACCCCCCGTAGCCCCCCGCGCCCCCCTCGAACCCCACTGCGAATAACCCCTCTGGGAATTTGCTATCCCGCCAAATTCCGCTTCCCgg > 2:850588/1‑150 (MQ=25) tgtgAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGT‑CGAACCTCTCGTAGCCCCCGGCGCCCCCGTCGAACCCTACTGCGAATAACCCTTCAGGAAATTGCCGATCCGGCCAATTGCCGCTTCCAgg < 1:1235318/150‑1 (MQ=255) gaTCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGT‑CGAACCTCTCGTAGGCCCCGGCGCCCCCGt > 1:975921/1‑84 (MQ=255) gaTCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGT‑CGAACCTCTCGTAGCCCCCGGCGCCCCCGt < 2:975921/84‑1 (MQ=255) gAGCGCCGCGCGGGCGGCGCGCGATCTGCGCCCCACCACCACCCCCGCGT‑CGAACCTCTCGTAGCCCCCGGCGCCCCCGTCGAACCCTACTGCGAATAACCCTTCAGGAAATTGCCGATCCGGCCAATTGCCGCTTCCAGGTCATCCAcc < 1:261868/150‑1 (MQ=255) | TACGGCGGAGTATGGCAGAGGATGGCGTGGGGGCTGTGGGATAGAGCGTTGCAGGATGTAAGAAACATTCGGCTTGGGGGCTGCGTCAAGGCCGCTGGGTGTTTGCCGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGT‑CGAACCTCTCGTAGCCCCCGGCGCCCCCGTCGAACCCTACTGCGAATAACCCTTCAGGAAATTGCCGATCCGGCCAATTGCCGCTTCCAGGTCATCCACC > NC_002947/2095090‑2095372 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |