| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,151,401 | C→T | 9.3% | I14I (ATC→ATT) | rluC → | ribosomal large subunit pseudouridine synthase C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,151,401 | 0 | C | T | 9.3% | 113.6 / 2.5 | 43 | I14I (ATC→ATT) | rluC | ribosomal large subunit pseudouridine synthase C |
| Reads supporting (aligned to +/- strand): ref base C (20/19); new base T (2/2); total (22/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 | |||||||||||
CCGGCAAAGAGCCTGGTGCCGCTGGCCTGCCGCTTTTGGCGGCGTTCGCGACTATAGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTGGTCTACCGCATCCTGCGCAAGGGTGAGGTGAGGGTCAACAAGGGCCGCGTCAAGCCGGAG > NC_002947/2151253‑2151539 | ccGGCAAAGAGCCTGGTGCCGCTGGCCTGCCGCTTTTGGCGGCGTTCGCGACTATAGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCg < 1:745391/150‑1 (MQ=255) ggCAAAGAGCCTGGTGCCGCTGGCCTGCCGCTTTTGGCGGCGTTCGCGACTATAGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGaa < 1:817579/150‑1 (MQ=255) agagCCTGGTGCCTTTGGCCTGCCGATTTTGGTGGCGTTCGCGACTATAGCAGCAATGATTAAGTGATTCAATTCCATAAAAAATTGTTATGAGCCCGTAATGACTACGAATGCCCCTCCGACTTCCGTCGTTCAGCTGATCGAACTcgc < 2:572817/150‑1 (MQ=255) agagCCTGGTGCCGCTGGCCTGCCGCTTTTGGCGGCGTTCGCGACTATAGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTcgc > 1:1019696/1‑150 (MQ=255) ccTGGTGCCGCTGGCCTGCCGCTTTTGGCGGCGTTCGCGACTATAGCAGCAATGAATACTTGCTTCACTTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCg < 1:291677/150‑1 (MQ=255) cTGCCGCTTTTGGCGGCGTTCGCGACTATAGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCaa > 2:1126175/1‑150 (MQ=255) tGCCGCTTTTGGCGGCGTTCGCGACTATAGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAAc < 2:1286764/150‑1 (MQ=255) tGCCGCTTTTGGCGGCGTTCGCGACTATAGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAAc < 1:868900/150‑1 (MQ=255) cGCTTTTGGCGGCGTTCGCGACTATAGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCa > 2:282394/1‑150 (MQ=255) cTTTTGGCGGCGTTCGCGACTATAGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATc > 2:192455/1‑150 (MQ=255) ttttGGCGGCGTTCGCGACTATAGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGc > 2:1082070/1‑140 (MQ=255) ttttGGCGGCGTTCGCGACTATAGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGc < 1:1082070/140‑1 (MQ=255) tGGCGGCGTTCGCGACTATAGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATa < 2:894684/150‑1 (MQ=255) gcggcgTTCGCGACTATAGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAAt > 2:506584/1‑150 (MQ=255) gcgTTCGCGACTATAGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTc < 1:1126175/150‑1 (MQ=255) gcgACTATAGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCCTCACTAATTTCCtcatc > 2:415575/1‑150 (MQ=255) gACTATAGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCAc > 2:498471/1‑150 (MQ=255) tataGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGc < 1:192455/150‑1 (MQ=255) taGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGccc > 1:465082/1‑150 (MQ=255) gCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGa > 2:778044/1‑150 (MQ=255) gCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGa < 2:1019696/150‑1 (MQ=255) gCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATCACGACCAATACCCCTCCGACTTCCGGCGTTCAGCGGATCAAAGTCGCGCCGGAGCTTTCCGGCCAACGCATCGATAATTTCCTCATACCCGGCCTCAAGGGCGTGCCCAAGa < 1:38913/150‑1 (MQ=255) cTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGa < 1:1029929/90‑1 (MQ=255) cTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGa > 2:1029929/1‑90 (MQ=255) tCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGacac < 1:506584/150‑1 (MQ=255) aaTTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTg > 1:335848/1‑150 (MQ=255) ttCCATAAAAAATTTTTATGATCCCGTAACGACGACCATTCCACCTACCATTTCCGGCGTTCAGCTGATCAAAGTCAGGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTGGt < 1:926443/150‑1 (MQ=255) aTAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGAATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTGGTCTAc > 2:305434/1‑150 (MQ=255) gATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTGGTCTACCGCATCCTGCGCAAg > 2:643/1‑150 (MQ=255) gacgacCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTGGTCTACCGCATCCTGCGCAAGGgtgaggtgag > 1:1086146/1‑150 (MQ=255) gacgacCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTGGTCTACCGCATCCTGCGCAAGGgtgaggtgag < 1:344342/150‑1 (MQ=255) aTACCCCTCCGACTTCCGGCGTTCAGCTGATCTAAGTCGCGCCGGAGCGTGCCGGCAAACGCATCGATAATTTCCTCATCAAGGCCATCAAGGGCGTGCCCAAGACACTGGTCTACCGCATCCTGCGCAAGGGTGAGGTGAGGGTcaaca > 2:77717/1‑150 (MQ=255) aCCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTGGTCTACCGCATCCTGCGCAAGGGTGAGGTGAGGGTCAACAAg < 1:498471/150‑1 (MQ=255) cTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTGGTCTACCGCATCCTGCGCAAGGGTGAGGTGAGGGTCAACAAGGGcc > 2:945482/1‑150 (MQ=255) cGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTGGTCTACCGCATCCTGCGCAAGGGTGAGGTGAGGGCCAACAAGGGCCGCGGCAAGcc > 1:145801/1‑150 (MQ=255) cGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTGGTCTACCGCATCCTGCGCAAGGGTGAGGTGAGGGTCAACAAGGGCCGCGTCAAGCCGGa < 2:1086146/150‑1 (MQ=255) gTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTGGTCTACCGCATCCTGCGCAAGGCTGAGGTGAGGGTCAACAAGGGCCGCGTCAAGCCGGAg > 2:941954/1‑150 (MQ=255) gCTGATTGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTGGTCTACCGCATCCTGCGCAAGggtgag > 2:532228/1‑112 (MQ=255) gCTGATTGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTGGTCTACCGCATCCTGCGCAAGggtgag > 2:532382/1‑112 (MQ=255) gCTGATTGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTGGTCTACCGCATCCTGCGCAAGggtgag < 1:532228/112‑1 (MQ=255) gCTGATTGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTGGTCTACCGCATCCTGCGCAAGggtgag < 1:532382/112‑1 (MQ=255) gCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTGGTCTACCGCATCCTGCGCAAGGGTGAGGTGAGGGTCAACAAGGGCCGCGTCAAGCCGGa < 2:983/144‑1 (MQ=255) gCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGCGCGTGCCCAAGACACTGGTCTACCGCATCCTGCGCAAGGGTGAGGTGAGGGTCAACAAGGGCCGCGTCAAGCCGGa > 1:983/1‑144 (MQ=255) | CCGGCAAAGAGCCTGGTGCCGCTGGCCTGCCGCTTTTGGCGGCGTTCGCGACTATAGCAGCAATGATTAAGTGCTTCAATTCCATAAAAAATTGTTATGATCCCGTAATGACGACCAATACCCCTCCGACTTCCGGCGTTCAGCTGATCGAAGTCGCGCCGGAGCTTGCCGGCCAACGCATCGATAATTTCCTCATCACGGCCCTCAAGGGCGTGCCCAAGACACTGGTCTACCGCATCCTGCGCAAGGGTGAGGTGAGGGTCAACAAGGGCCGCGTCAAGCCGGAG > NC_002947/2151253‑2151539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |