Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,481,319 A→C 7.4% L24R (CTG→CGG)  PP_2175 ← 3‑oxoacyl‑ACP reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,481,3190AC 7.4% 143.6 / 3.0 54L24R (CTG→CGG) PP_21753‑oxoacyl‑ACP reductase
Reads supporting (aligned to +/- strand):  ref base A (24/25);  new base C (2/2);  total (27/27)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

CCCACTTTTCCACCACGGCATCGACCAGGCGTTTCAGGTCCTCAACCGACTGGTTGCTACCCGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGCTGAATGCTTAGGCGCACTAAAATTAGCAGCAGTCGTGGCAGCGAGGGAGACAG  >  NC_002947/2481170‑2481465
                                                                                                                                                      |                                                                                                                                                  
cccACTTTTCCACCACGGCATCGACCAGGCGTTTCAGGTCCTCAACCGACTGGTTGCTACCCGTTACGCCAATACCACCAAGCTCCGCAGCCAGTGGTTCGCCCTTCCCCGAGGAGAACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCa                                                                                                                                                    >  1:631660/1‑150 (MQ=255)
           accacGGCATCGACCAGGCGTTTCAGGTCCTCAACCGACTGGTTGCTACCCGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGtgcc                                                                                                                                         >  2:818301/1‑150 (MQ=255)
            ccacGGCATCGACCAGGCGTTTCAGGTCCTCAACCGACTGGTTGCTACCCGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGtgccg                                                                                                                                        >  1:226523/1‑150 (MQ=255)
             cacGGCATCGACCAGGCGTTTCAGGTCCTCAACCGACTGGTTGCTACCCGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGtgccgc                                                                                                                                       <  2:703787/150‑1 (MQ=255)
                 gCATCGACCAGGCGTTTCAGGTCCTCAACCGACTGGTTGCTACCCGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGtgccgctgcc                                                                                                                                   <  2:100711/150‑1 (MQ=255)
                    tCGACCAGGCGTTTCAGGTCCTCAACCGACTGGTTGCTACCCGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGGCAGCGGCACGGCGCCTggccgctgacggg                                                                                                                                <  2:515544/150‑6 (MQ=255)
                       aCCAGGCGTTTCAGGTCCTCAACCGACTGGTTGCTACCCGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGccc                                                                                                                             <  1:462322/150‑1 (MQ=255)
                           ggCGTTTCAGGTCCTCAACCGACTGGTTGCTACCCGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATAc                                                                                                                         <  2:156587/150‑1 (MQ=255)
                               tttCAGGTCCTCAACCGACTGGTTGCTACCCGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGACCTTGGCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACt                                                                                                                     <  2:944812/150‑1 (MQ=255)
                                        cTCAACCGACTGGTTGCTACCCGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACctgc                                                                                                            >  2:197859/1‑150 (MQ=255)
                                          cAACCGACTGGTTGCTACCCGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACctgctg                                                                                                          <  1:197859/150‑1 (MQ=255)
                                           aaCCGACTGGTTGCTACCCGTTACGCCAATACCACAAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑TCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCTCATa                                                                                                                          <  2:59844/133‑1 (MQ=255)
                                           aaCCGACTGGTTGCTACCCGTTACGCCAATACCACAAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑TCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCTCATa                                                                                                                          >  1:59844/1‑133 (MQ=255)
                                              cGACTGGTTGCTACCCGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGtgat                                                                                                      >  2:102363/1‑150 (MQ=255)
                                              cGACTGGTTGCTACCCGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGATGtgat                                                                                                      <  1:95228/150‑1 (MQ=255)
                                                 cTGGTTGCTACCCGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTgatgat                                                                                                   <  1:818301/150‑1 (MQ=255)
                                                  tGGTTGCTACCCGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATc                                                                                                  <  2:833831/150‑1 (MQ=255)
                                                           cccGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCtgt                                                                                                         <  2:123365/134‑1 (MQ=255)
                                                           cccGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCtgt                                                                                                         >  1:123365/1‑134 (MQ=255)
                                                           cccGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATc                                                                                                  >  1:1250729/1‑141 (MQ=255)
                                                           cccGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATc                                                                                                  <  2:1250729/141‑1 (MQ=255)
                                                             cGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTc                                                                                       >  2:546427/1‑150 (MQ=255)
                                                               ttACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTa                                                                                     <  2:631660/150‑1 (MQ=255)
                                                                   gCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGa                                                                                 >  2:927133/1‑150 (MQ=255)
                                                                         accaccAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACAtgct                                                                           <  1:641275/150‑1 (MQ=255)
                                                                           caccaAGCTCGGCAGCCAGTGCTTTGCCCTTGTATGAATCAAATA‑GATGACTTACCTTTAATCGTTCAGCGGCTGCGCGCCTTTTTGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACAtgctgc                                                                         >  2:337578/1‑150 (MQ=255)
                                                                           caccaAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACAtgctgc                                                                         >  1:478830/1‑150 (MQ=255)
                                                                            accaAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGcc                                                                        >  1:936420/1‑150 (MQ=255)
                                                                                aGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCg                                                                    <  1:102363/150‑1 (MQ=255)
                                                                                 gCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCgg                                                                   >  1:50658/1‑150 (MQ=255)
                                                                                   tCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGtgcc                                                                                                                                         <  2:1270511/78‑1 (MQ=255)
                                                                                   tCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGtgcc                                                                                                                                         >  1:1270511/1‑78 (MQ=255)
                                                                                       cAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGtt                                                             <  2:226523/150‑1 (MQ=255)
                                                                                       cAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGtt                                                             <  1:425425/150‑1 (MQ=255)
                                                                                         gCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCACGGCGCCTggccgctgacgg                                                                                                                                 >  1:1135334/1‑76 (MQ=25)
                                                                                         gCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCACGGCGCCTggccgctgacgg                                                                                                                                 <  2:1135334/80‑2 (MQ=25)
                                                                                             gTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGc                                                       >  2:775982/1‑150 (MQ=255)
                                                                                                 ttCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGCTGaa                                                   <  1:775982/150‑1 (MQ=255)
                                                                                                            ccGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCAGTGCCACCTGCTGTGATGATCGGAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGCTGAATGCTTAGgcgc                                        >  1:1053799/1‑150 (MQ=255)
                                                                                                            ccGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGCTGAATGCTTAGgcgc                                        >  2:175942/1‑150 (MQ=255)
                                                                                                            ccGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGCTGAATGCTTAGgcgc                                        >  2:772038/1‑150 (MQ=255)
                                                                                                                    gaCAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGCTGAATGCTTAGGCGCACTaaaa                                 <  2:255616/149‑1 (MQ=255)
                                                                                                                    gaCAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGCTGAATGCTTAGGCGCACTaaaa                                 >  1:255616/1‑149 (MQ=255)
                                                                                                                       aGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGGTATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGCTGAATGCTTAGGCGCACTAAAATTag                             >  1:291298/1‑150 (MQ=255)
                                                                                                                         gATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGCTGAATGCTTAGGCGCACTAAAATTagca                           <  1:546427/150‑1 (MQ=255)
                                                                                                                            g‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGCTGAATGCTTAGGCGCACTAAAATTAgcagca                        <  2:478830/150‑1 (MQ=255)
                                                                                                                              ccGACCTTGAACCCGTCAGCGGCCAGGCGCCGTACCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGAGATGCTGCCTCCGGAACGTTAATCGCTGAATGCTTAGGCGCACTAAAATTAGcagcag                       >  1:852534/1‑150 (MQ=255)
                                                                                                                                    ttGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGCTGAATGCTTAGGCGCACTAAAATTAGCAGCAGTCGTgg                 >  1:1252909/1‑150 (MQ=255)
                                                                                                                                    ttGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGCTGAATGCTTAGGCGCACTAAAATTAGCAGCAGTCGTgg                 <  1:772038/150‑1 (MQ=255)
                                                                                                                                        aCCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTcc                                                                     <  2:61816/94‑1 (MQ=255)
                                                                                                                                        aCCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTcc                                                                     >  1:61816/1‑94 (MQ=255)
                                                                                                                                          gcggcAGCGGCACGGCGCCTGGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGCTGAATGCTTAGGCGCACTAAAATTAGCAGCAGTCGTGGCAGCGa           >  2:531092/5‑150 (MQ=255)
                                                                                                                                             tCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGCTGAATGCTTAGGCGCACTAAAATTAGCAGCAGTCGTGGCAGCGAggg        <  2:936420/150‑1 (MQ=255)
                                                                                                                                                 cGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGCTGAATGCTTAGGCGCACTAAAATTAGCAGCAGTCGTGGCAGCGAGGGAGAc    >  1:621471/1‑150 (MQ=255)
                                                                                                                                                   gCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGCTGAATGCTTAGGCGCACTAAAATTAGCAGCAGTCGTGGCAGCGAGGGAGACAg  >  1:1118186/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                                  
CCCACTTTTCCACCACGGCATCGACCAGGCGTTTCAGGTCCTCAACCGACTGGTTGCTACCCGTTACGCCAATACCACCAAGCTCGGCAGCCAGTGCTTCGCCCTTGCCCGAGGAGGACAGGATG‑CCGACCTTGAACCCGTCAGCGGCCAGGCGCCGTGCCGCTGCCGCGCCCATACCACTGCCACCTGCTGTGATGATCGCAACCTTTTCTACTGACATGCTGCCTCCGGAACGTTAATCGCTGAATGCTTAGGCGCACTAAAATTAGCAGCAGTCGTGGCAGCGAGGGAGACAG  >  NC_002947/2481170‑2481465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑