Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,487,373 | A→G | 10.5% | D127G (GAC→GGC) | PP_2181 → | Cro/CI family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,487,373 | 0 | A | G | 10.5% | 98.8 / 3.3 | 38 | D127G (GAC→GGC) | PP_2181 | Cro/CI family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base A (15/19); new base G (2/2); total (17/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.06e-01 |
GACTGGGTGACCCGCCCGCACGAGCGTCGCACGCTGCACCTGGCCGGTGGCATCACCGATGTGCTGGCATCGCCCTCCATAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCACGCCAATGACAGTTTTCAGTTGCAACCCCACGCCCGTTTCCGTTACGCCAACCTGACCGACAAG > NC_002947/2487225‑2487518 | gACTGGGTGACCCGCCCGCACGAGCGTCGCACGCTGCACCTGGCCGGTGGCATCACCGATGTGCTGGCATCGCCCTCCATAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGgac < 1:1033258/150‑1 (MQ=255) ggTGACCCGCCCGCACGAGCGTCGCACGCTGCACCTGGCCGGTGGCATCACCGATGTGCTGGCATCGCCCTCCATAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAg > 1:427922/1‑150 (MQ=255) ccgcACGAGCGTCGCACGCTGCACCTGGCCGGTGGCATCACCGATGTGCTGGCATCGCCCTCCATAACGGGCGCGTTTTCCATGCTCGACAGCCGTTTGCATCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAg < 2:1276919/150‑1 (MQ=255) aCGAGCGTCGCACGCTGCACCTGGCCGGTGGCATCACCGATGTGCTGGCATCGCCCTCCATAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGtt < 2:109872/150‑1 (MQ=255) gCGTCGCACGCTGCACCTGGCCGGTGGCATCACCGATGTGCTGGCATCGCCCTCCATAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGGCGACAGCTCGGAGCAGGGTTGCtt > 2:747974/1‑150 (MQ=255) cGTCGCACGCAGAACCTGGCCGGTGGCATCACCGATGTGCTGGCATCGCCCTCCATAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTc < 1:583586/150‑1 (MQ=255) cACGCTGCACCTGGCCGGTGGCATCACCGATGTGCTGGCATCGCCCTCCATAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCt < 1:194919/150‑1 (MQ=255) cTGCACCTGGCCGGTGGCATCACCGATGTGCTGGCATCGCCCTCCATAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGGCGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGaa < 1:747974/150‑1 (MQ=255) tGCACCTGGCCGGTGGCATCACCGATGTGCTGGCATCGCCCTCCATAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAg < 1:1062269/150‑1 (MQ=255) cTGGCCGGTGGCATCACCGATGTGCTGGCATCGCCCTCCATAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGaa > 1:1144931/1‑150 (MQ=255) cATCACCGATGTGCTGGCATCGCCCTCCATAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGtgtg < 2:1028125/150‑1 (MQ=255) tgCTGGCATCGCCCTCCATAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATg < 2:427922/150‑1 (MQ=255) cTGGGATCGCCCTCAATAACGGGCGCGTTTTCCACGCTGGACAGCCATTTGCACCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTCTGGTTGGGCGATGCt < 2:303483/150‑1 (MQ=255) cccTCCATAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTc > 1:443025/1‑150 (MQ=255) tcTCCATAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGaa > 1:44737/2‑110 (MQ=255) ccTCCATAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGaa < 2:44737/110‑1 (MQ=255) aTAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGc < 2:918858/129‑1 (MQ=255) aTAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGc > 1:918858/1‑129 (MQ=255) aTAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGc > 1:395527/1‑148 (MQ=255) aTAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGc < 2:395527/148‑1 (MQ=255) gcgcGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGGCGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCACGCCa > 1:559689/1‑150 (MQ=255) gcgTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCACGCCAAt < 2:628290/150‑1 (MQ=255) gTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCACGCCAATGa > 2:766251/1‑150 (MQ=255) gCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCACGCCAATGACAGTTTTCa > 2:253204/1‑150 (MQ=255) aGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGgtgt < 1:166628/94‑1 (MQ=255) aGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGgtgt > 2:166628/1‑94 (MQ=255) aGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCACGCCAATGACAGTTTTCAGTTGCaa < 1:519349/150‑1 (MQ=255) gCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGGCGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCACGCCAATGACAGTTTTCAGTTGCAAc < 2:559689/150‑1 (MQ=255) ccATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGCGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCACGCCAATGACAGTTTTCAGTTGCAAcc > 2:363303/1‑150 (MQ=255) cATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCACGCCAATGACAGTTTTCAGTTGCAAccc > 2:764197/1‑150 (MQ=255) gCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCACGCCAATGACAGTTTTCAGTTGCAACCCCACGc < 2:894222/150‑1 (MQ=255) cGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCACGCCAATGACAGTTTTCAGTTGCAACCCCACGCCCGtt < 2:443025/150‑1 (MQ=255) ccAGCAGTAGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCACGCCAATGACAGTTTTCAGTTGCAACCCCACGCCCGTTTCCGtt < 2:295517/150‑1 (MQ=255) gaggagTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACTCTTCACGCCAATGACAGTTTTCACTTGCAACCCCCCGCCCCTTTCCGTTCCGCCAACCTg > 2:215767/1‑150 (MQ=255) tACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCACGCCAATGACAGTTTTCAGTTGCAACCCCACGCCCGTTTCCGTTACGCCAACCTGACCGAc > 1:879185/1‑150 (MQ=255) ccTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCAc < 1:759354/88‑1 (MQ=255) ccTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCAc > 2:759354/1‑88 (MQ=255) cTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCACGCCAATGACAGTTTTCAGTTGCAACCCCACGCCCGTTTCCGTTACGCCAACCTGACCGACAAg > 1:45047/1‑150 (MQ=255) cTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCACGCCAATGACAGTTTTCAGTTGCAACCCCACGCCCGTTTCCGTTACGCCAACCTGACCGACAAg < 2:1144931/150‑1 (MQ=255) | GACTGGGTGACCCGCCCGCACGAGCGTCGCACGCTGCACCTGGCCGGTGGCATCACCGATGTGCTGGCATCGCCCTCCATAACGGGCGCGTTTTCCATGCTCGACAGCCATTTGCAGCCGGGAGCCAGCAGTGGCGAGGAGTACCTGGACGACAGCTCGGAGCAGGGTTGCTTCGTGCTCGAAGGCGAACTGACGGTGTGGTTGGGCGATGCTGAGCCGGTCACGCTGCACGCCAATGACAGTTTTCAGTTGCAACCCCACGCCCGTTTCCGTTACGCCAACCTGACCGACAAG > NC_002947/2487225‑2487518 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |