Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,574,663 | T→C | 8.2% | M459T (ATG→ACG) | PP_2257 → | aerotaxis receptor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,574,663 | 0 | T | C | 8.2% | 128.4 / 2.2 | 49 | M459T (ATG→ACG) | PP_2257 | aerotaxis receptor |
Reads supporting (aligned to +/- strand): ref base T (20/25); new base C (2/2); total (22/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.93e-01 |
TCATCGATGCCCTGCGCAGTGGCGCCGAGGAAGCCGTGGCGATCGCCAGCCGAGGCATCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCGGTATTGCCCAGCACAGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGT > NC_002947/2574516‑2574810 | tcatcGATGCCCTGCGCAGTGGCGCCGAGGAAGCCGTGGCGATCGCCAGCCGAGGCATCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGa < 1:501470/150‑1 (MQ=255) cGATGCCCTGCGCAGTGGCGCCGAGGAAGCCGTGGCGATCGCCAGCCGAGGCATCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGCTGCTGTACAGCGCATCAGCGATATGAGCca < 1:33735/150‑1 (MQ=255) tGCCCTGCGCAGTGGCGCCGAGGAAGCCGTGGCGATCGCCAGCCGAGGCATCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCcagca < 1:126677/150‑1 (MQ=255) tGCCCTGCGCAGTGGCGCCGAGGAAGCCGTGGCGATCGCCAGCCGAGGCATCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCcagca < 1:196066/150‑1 (MQ=255) ccTGCGCAGTGGCGCCGAGGAAGCCGTGGCGATCGCCAGCCGAGGCATCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGAt < 2:115434/150‑1 (MQ=255) cTGCGCAGTGGCGCCGAGGAAGCCGTGGCGATCGCCAGCCGAGGCATCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATg < 1:124814/150‑1 (MQ=255) cTGCGCAGTGGCGCCGAGGAAGCCGTGGCGATCGCCAGCCGAGGCATCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATg < 2:1106685/150‑1 (MQ=255) tGGCGCCGAGGAAGCCGTGGTGATCGCCAGCCGAGGCATCGACGGTGAAGAGCAGGGCGTTGACCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGAGCATTAGCGATATGAGCCAGCAGATGGCCACCga > 2:88262/1‑149 (MQ=255) gcCGAGGAAGCCGTGGCTATCGCCAGCCGAGGCATCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCg > 2:656645/1‑150 (MQ=255) ccGAGGAAGCCGTGGCGATCGCCAGCCGAGGCATCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCgc > 1:256591/1‑150 (MQ=255) gAGGAAGCCGTGGCGATCGCCAGCCGAGGCATCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCgcag > 2:862904/1‑150 (MQ=255) ctGGCGATCGCCAGCGGAGGCATCGACGGTGCCGAGCAGGGCGGTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTcg < 1:88262/149‑1 (MQ=255) ggCGATCGCCAGCCGAGGCATCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGc > 1:266709/1‑132 (MQ=255) ggCGATCGCCAGCCGAGGCATCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGc < 2:266709/132‑1 (MQ=255) aTCGCCAGCCGAGGCATCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTg > 1:826265/1‑150 (MQ=255) tCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCcagca < 2:811060/100‑1 (MQ=255) tCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCcagca > 1:811060/1‑100 (MQ=255) tCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTcgc < 2:873376/150‑1 (MQ=255) tCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTcgc > 1:374102/1‑150 (MQ=255) aCGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGc < 1:1285458/150‑1 (MQ=255) cGGTGCCGAGCAGGGCGTTGCCCAGATTTATGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCa < 1:569/150‑1 (MQ=255) tGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGAt < 2:15988/150‑1 (MQ=255) gAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCAc < 1:36258/98‑1 (MQ=255) gAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCAc > 2:36258/1‑98 (MQ=255) gAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATACGAGCCAGCAGATGGCCAc > 2:36277/1‑98 (MQ=255) gAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATACGAGCCAGCAGATGGCCAc < 1:36277/98‑1 (MQ=255) gggCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGttt < 2:290992/131‑1 (MQ=255) gggCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGttt > 1:290992/1‑131 (MQ=255) ggCGTTGCCCAGGTGCAGGAAGCTCGGCCGGCGCTGCCTGACATTCGTACCGCAGTGAAGAAGATAAAAAATATTGGTATGCGCATTGGCACCGCCTCGCATCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTa > 2:786935/1‑150 (MQ=255) ttGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCg < 2:536415/150‑1 (MQ=255) ttGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCg < 1:778299/150‑1 (MQ=255) ccAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGCACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGt < 2:1090419/120‑1 (MQ=255) ccAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGCACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGt > 1:1090419/1‑120 (MQ=255) cAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCGGTAtt > 2:156176/1‑150 (MQ=255) tGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGGTATTAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGTCGTAGCCGGTATTGccc < 2:174330/150‑1 (MQ=255) tGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCGGTATTGccc < 2:826265/150‑1 (MQ=255) gCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCGGTATTGCCCa > 2:701728/1‑150 (MQ=255) cAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATgg > 1:1122278/1‑73 (MQ=255) cAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATgg < 2:1122278/73‑1 (MQ=255) aGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCGGTATTGCCCAGc > 2:711004/1‑150 (MQ=255) ggAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCGGTATTGCCCAGca < 1:757661/150‑1 (MQ=255) ggAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATACGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCGGTATTg > 1:893462/1‑143 (MQ=255) ggAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATACGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCGGTATTg < 2:893462/143‑1 (MQ=255) gAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGa < 2:334082/58‑1 (MQ=255) gAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGa > 1:334082/1‑58 (MQ=255) tCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCGGTATTGCCCAGCACAGCGCCCATAGCGCCAAcgccgccgc < 1:189167/150‑1 (MQ=255) tGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCGGTATTGCCCAGCACAGCGCCCATAGCGCCAACGCCGCCGCCTc > 1:260638/1‑150 (MQ=255) gcacATCAGCGATGTTAGCCAGCGGGTGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCGGTATTGCCCAGCACCGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGa > 2:601943/4‑150 (MQ=255) gCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCGGTATTGCCCAGCACAGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAac > 2:1126694/1‑150 (MQ=255) atatGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCGGTATTGCCCAGCACAGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACg > 2:238648/1‑150 (MQ=255) atatGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCGGTATTGCCCAGCACAGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACg > 2:900318/1‑150 (MQ=255) tatGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCGGTATTGCCCAGCACAGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACgt < 2:257686/150‑1 (MQ=255) | TCATCGATGCCCTGCGCAGTGGCGCCGAGGAAGCCGTGGCGATCGCCAGCCGAGGCATCGACGGTGCCGAGCAGGGCGTTGCCCAGGTGCAGGAAGCTCGGCAGGCGCTGCATGGCATTCGTGACGCGGTACAGCGCATCAGCGATATGAGCCAGCAGATGGCCACCGCCTCGCAGCAGCAGTCGGCGGTGGCAGAAGACGTTTCGCGGCAGATCAACGGCGTAGCCGGTATTGCCCAGCACAGCGCCCATAGCGCCAACGCCGCCGCCTCGCGCGGTACCGAACTGGAACACGT > NC_002947/2574516‑2574810 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |