| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,811,826 | A→G | 10.5% | K84E (AAA→GAA) | infC → | translation initiation factor IF‑3 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,811,826 | 0 | A | G | 10.5% | 101.9 / 3.3 | 38 | K84E (AAA→GAA) | infC | translation initiation factor IF‑3 |
| Reads supporting (aligned to +/- strand): ref base A (18/16); new base G (2/2); total (20/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.57e-01 | |||||||||||
TCTCGATTGATGAAGCGCTGCGTATCGCTGATGAAGCGAAGCTGGACCTGGTAGAAATCTCTGCAGACGCGGTACCACCCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTACGTTTCCTTACCGATGGGGACAAGGCCAAGATCTCTCTGAGATTCCGTGGTCGT > NC_002947/2811680‑2811969 | tctcGATTGATGAAGCGCTGCGTATCGCTGATGAAGCGAAGCTGGACCTGATAGAAATCTCTGCAGACGCGGTACCACCCGTCTGCAAGGTCATGGAATACGGTAAGAACTTCTTCGCGAAGAAGAAGCAGGCTAACGACGGCAAGaaaa > 1:460763/1‑150 (MQ=255) cGATTGATGAAGCGCTGCGTATCGCTGATGAAGCGAAGCTGGACCTGGTAGAAATCTCTGCAGACGCGGTACCACCCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAAcc > 1:787354/1‑150 (MQ=255) aTTGATGAAGCGCTGCGTATCGCTGATGAAGCGAAGCTGGACCTGGTAGAAATCTCTGCAGACGCGGTACCACCCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAg < 1:1102139/150‑1 (MQ=255) atgaAGCGCTGCGTATCGCTGATGAAGCGAAGCTGGACCTGGTAGAAATCTCTGCAGACGCGGTACCACCCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAAc > 2:1211108/1‑150 (MQ=255) cTGCGTATCGCTGATGAAGCGAAGCTGGACCTGGTAGAAATCTCTGCAGACGCGGTACCACCCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAAcagatccag > 1:117827/1‑150 (MQ=255) gatgaAGCGAAGCTGGACCTGGTAGAAATCTCTGCAGACGCGGTACCACCCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATc < 2:117827/150‑1 (MQ=255) ggACCTGGTAGAAATCTCTGCAGACGCGGTACCACCCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAgg < 1:1012156/150‑1 (MQ=255) gACCTGGTAGAAATCTCTGCAGACGCGGTACCACCCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAggg > 1:39592/1‑150 (MQ=255) ccTGGTAGAAATCTCTGCAGACGCGGTACCACCCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGAc < 1:1211108/150‑1 (MQ=255) aaTCTCTGCAGACGCGGTACCACCCGTCTGCAAGGTCATGGACTAAGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAACAAATCAAGTTTCGTCCAGGGACGGAGGATgg < 2:787354/150‑1 (MQ=255) tctGCAGACGCGGTACCACCCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGGAAAACCAGaaa > 2:1251526/1‑99 (MQ=255) tctGCAGACGCGGTACCACCCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGGAAAACCAGaaa < 1:1251526/99‑1 (MQ=255) ctGCACACGCGGCACCCGCCGTCTGCAAGGACATGGACTACGATAAGCACCTCCTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATGAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGAtt < 1:1224885/150‑1 (MQ=255) tGCAGACGCGGTACCACCCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCa < 2:546262/93‑1 (MQ=255) tGCAGACGCGGTACCACCCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCa > 1:546262/1‑93 (MQ=255) gCAGACGCGGTACCACCCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTAc > 1:290900/1‑150 (MQ=255) ggTACCACCCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTaaa > 2:1024759/1‑150 (MQ=255) caccCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTAc < 1:1024759/150‑1 (MQ=255) accCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACg > 2:592237/1‑150 (MQ=255) ccGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCa > 1:37671/1‑150 (MQ=255) gTCTGCAAGGTCATGGACTACGGTAAGCAACTATTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAAc < 2:1173633/150‑1 (MQ=255) tGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAGGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCa > 2:1227036/1‑108 (MQ=255) tGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCa < 1:1227036/108‑1 (MQ=255) aGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTAc > 1:569449/1‑150 (MQ=255) cACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGGAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTACGTTTCCTTACCGATGGGGAc > 1:704632/1‑150 (MQ=255) cGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTACGTTTCCTTACCGATGGGGACAAGGCCaa < 1:592237/150‑1 (MQ=255) cGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTACGTTTCCTTACCGATGGGGACAAGGCCaa < 1:514744/150‑1 (MQ=255) agaagaagaAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTACGTTTCCTTACCGATGGGGACAAGGCCAAGa > 1:949028/1‑150 (MQ=255) aagaagCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTACGTTTCCTTACCGATGGGGACAAGGCCAAGAtctct < 2:569449/150‑1 (MQ=255) gaagCAGGCTAACGAAGCCAAGGAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTACGTTTCCTTACCGATGGGGACAAGGCCAAGATctctct < 2:704632/150‑1 (MQ=255) ggCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTACGTTTCCTTACCGATGGGGACAAGGACAAGATCTCTCTGAGAtt > 1:449803/1‑150 (MQ=255) gCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTACGTTTCCTTACCGATGGGGACAAGGCCAAGATCTCTCTGAGATTc > 2:376787/1‑150 (MQ=255) tAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTACGTTTCCTTACCGATGGGGACAAGGCCAAGATCTCTCTGAGATTCCg > 2:1128372/1‑150 (MQ=255) aaCGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTACGTTTCCTTACCGATGGGGGCAGGGCCAAGATCTCTCTGAGATTCCGt > 2:162361/1‑150 (MQ=255) aaGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTACGTTTCCTTACCGATGGGGACAAGGCCAAGATCTCTCTGAGATTCCGTGGTc < 2:37671/150‑1 (MQ=255) gCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTACGTTTCCTTACCGATGGGGACAAGGCCAAGATCTCTCTGAGATTCCGTGGTCGt < 2:290900/150‑1 (MQ=255) gCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGCACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTACGTTTCCTTACCGATGGGGACAAGGCCAAGATCTCTCTGAGATTCCGTGGTCGt > 1:801744/1‑150 (MQ=255) cAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTACGTTTCCTTACCGATGGGGACAAGGCCAAGATCTCTCTGAGATTCCGTg > 1:131688/1‑143 (MQ=255) cAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTACGTTTCCTTACCGATGGGGACAAGGCCAAGATCTCTCTGAGATTCCGTg < 2:131688/143‑1 (MQ=255) | TCTCGATTGATGAAGCGCTGCGTATCGCTGATGAAGCGAAGCTGGACCTGGTAGAAATCTCTGCAGACGCGGTACCACCCGTCTGCAAGGTCATGGACTACGGTAAGCACCTCTTCGAGAAGAAGAAGCAGGCTAACGAAGCCAAGAAAAACCAGAAACAGATCCAGATCAAAGAAATCAAGTTTCGTCCAGGGACGGAGGATGGGGATTACCAGGTAAAACTACGCAACCTGGTACGTTTCCTTACCGATGGGGACAAGGCCAAGATCTCTCTGAGATTCCGTGGTCGT > NC_002947/2811680‑2811969 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |