| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,910,534 | G→A | 9.3% | intergenic (‑54/‑490) | aprDA ← / → PP_2561 | alkaline protease secretion ABC transporter ATP‑binding protein/hemolysin‑type calcium‑binding bacteriocin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,910,534 | 0 | G | A | 9.3% | 112.3 / 2.4 | 43 | intergenic (‑54/‑490) | aprDA/PP_2561 | alkaline protease secretion ABC transporter ATP‑binding protein/hemolysin‑type calcium‑binding bacteriocin |
| Reads supporting (aligned to +/- strand): ref base G (19/20); new base A (2/2); total (21/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.27e-01 | |||||||||||
CGCTGAAGGCGGCTAGGGCGTAGAAGCTGCGGCGCAAGTGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTCCCACAGACAGCAGCGTAGGTTGCAACGAAACATCCAGTAATATCATTTCGCTCTATAAATACTTTGAAC > NC_002947/2910393‑2910676 | cgcTGAAGGCGGCTAGGGCGTAGAAGCTGCGGCGCAAGTGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCtgttgt < 1:566106/150‑1 (MQ=255)cgcTGAAGGCGGCTAGGGCGTAGAAGCTGCGGCGCAAGTGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCtgttgt > 1:442630/1‑150 (MQ=255) aaGGCGGCTAGGGCGTAGAAGCTGCGGCGCAAGTGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCtgtt > 2:866900/1‑143 (MQ=255) aaGGCGGCTAGGGCGTAGAAGCTGCGGCGCAAGTGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCtgtt < 1:866900/143‑1 (MQ=255) tAGGGCGTAGAAGCTGCGGCGCAAGTGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCg > 2:191668/1‑150 (MQ=255) gTAGAAGCTGCGGCGCAAGTGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGc > 2:864596/1‑150 (MQ=255) gTAGAAGCTGCGGCGCAAGTGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACAGCcgttgtacgg > 2:1205936/1‑131 (MQ=255) gTAGAAGCTGCGGCGCAAGTGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACAGCcgttgtacgg < 1:1205936/135‑5 (MQ=255) gTAGAAGCTGCGGCGCAAGTGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACAGCcgttgtacgg < 1:1206003/135‑5 (MQ=255) gTAGAAGCTGCGGCGCAAGTGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACAGCcgttgtacgg > 2:1206003/1‑131 (MQ=255) gAAGCTGCGGCGCAAGTGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAgg > 2:64162/1‑150 (MQ=255) gCTGCGGCGCAAGTGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCATTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCgg > 1:1087139/1‑150 (MQ=255) gcgcAAGTGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCa < 1:1099520/150‑1 (MQ=255) gcAAGTGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGAGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCCCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACt > 1:1223662/1‑150 (MQ=255) aGTGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCATTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGAt < 2:1087139/150‑1 (MQ=255) tGAACCAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATgg < 1:191668/150‑1 (MQ=255) tGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGGGGCCCAGTCGAGAGGCGCCCCGTACAACGGATGTTCTACCACTTTCACCGCCGCGCAGGCGTGCCGCACTGATgg > 1:988307/1‑150 (MQ=255) aCGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGc < 1:64162/150‑1 (MQ=255) gTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGccc > 2:1126316/1‑150 (MQ=255) ggCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCACTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCaaa < 2:684582/150‑1 (MQ=255) ttCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGc < 2:442630/150‑1 (MQ=255) ggAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTGGTACTGATGGCGATATTGCCCAAACGCTGCGtt < 1:864596/150‑1 (MQ=255) gtggCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCt > 1:1184256/1‑70 (MQ=255) gtggCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCt < 2:1184256/70‑1 (MQ=255) gCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTCCCACAGAcagcag > 1:521899/1‑150 (MQ=255) ttAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTc < 1:1058357/135‑1 (MQ=255) ttAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTc > 2:1058357/1‑135 (MQ=255) ttAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTCCCACAGACAGCAGCg > 1:1027691/1‑150 (MQ=255) gCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTCCCACAGACAGCAGCGTAgg < 1:923793/150‑1 (MQ=255) gAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTCCCACAGACAGCAGCGTAGGTTGCaa < 1:464363/150‑1 (MQ=255) cTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTCCCACAGACAGCAGCGTAGGTTGCAACGaaa < 2:521899/150‑1 (MQ=255) tATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTCCCACAGACAGCAGCGTAGGTTGCAACGAAACATCCAg < 1:1202053/150‑1 (MQ=255) tCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGc > 2:1206184/1‑104 (MQ=255) tCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGc < 1:1206184/104‑1 (MQ=255) acaAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTCCCACAGACAGCAGCGTAGGTTGCAACGAAACATCCAGTAat > 2:8337/1‑150 (MQ=255) aaGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTCCCACAGACAGCAGCGTAGGTTGCAACGAAACATCCAGTAATATCATTTCGc < 1:1100364/150‑1 (MQ=255) gcgcCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTCCCACAGACAGCAGCGTAGGTTGCAACGAAACATCCAGTAATATCATTTCGCTCTATAAATAc < 2:1027691/150‑1 (MQ=255) ccccGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTCCCACAGACAGCAGCGTAGGTTGCAACGAAACATCCAGTAATATCATTTCGCTCTATAAATACttt > 2:987680/1‑150 (MQ=255) ccccGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTCCCACAGACAGCAGCGTAGGTTGCAACGAAACATCCAGTAATATCATTTCGCTCTATAAATACttt < 1:8337/150‑1 (MQ=255) ccGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTCCCACAGACAGCAGCGTAGGTTGCAACGAAACATCCAGTAATATCATTTCGCTCTATAAATACTTTGa > 2:416419/1‑150 (MQ=255) gTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTCCCACAGACAGCAGCGTAGGTTGCAACGAAACATCCAGTAATATCATTTCGCTCTATAAATACTTTGAAc > 1:646589/1‑150 (MQ=255) aCAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTCCCACAGACAGCAGCGTa > 1:239241/1‑96 (MQ=255) aCAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTCCCACAGACAGCAGCGTa < 2:239241/96‑1 (MQ=255) | CGCTGAAGGCGGCTAGGGCGTAGAAGCTGCGGCGCAAGTGAAACAGCACGTCGGCCAGTTCGGAGCGGGTGCGTGGTGGCTTAGGCATCGGAGGCCTCCCTTTATCACAAAGCGGGAAGCCCTTGCGGCGCCCCGTACAACGGCTGTTGTGGATTTTTGGTCGGCTCGCAGGCGGGTCGCACTGATGGCGATATTGCCCAAACGCTGCGTTGCTCCCACAGACAGCAGCGTAGGTTGCAACGAAACATCCAGTAATATCATTTCGCTCTATAAATACTTTGAAC > NC_002947/2910393‑2910676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |