Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,463,076 | A→T | 8.3% | L442Q (CTG→CAG) | PP_3078 ← | ABC transporter substrate‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,463,076 | 0 | A | T | 8.3% | 139.3 / 4.6 | 48 | L442Q (CTG→CAG) | PP_3078 | ABC transporter substrate‑binding protein |
Reads supporting (aligned to +/- strand): ref base A (21/23); new base T (2/2); total (23/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.31e-01 |
GATCTGGGCCAGGTTGCGCTTCCACGGCAGCAGCAGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGAGCGGCCA > NC_002947/3462931‑3463223 | gATCTGGGGCAGGTTGCGCTTCCACGGCAGCAGCAGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGcagggccagggc > 2:373962/1‑150 (MQ=255) ggCCAGGTTGCGCTTCCACGGCAGCAGCAGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCaa < 2:1202137/150‑1 (MQ=255) ggCCAGGTTGCGCGTCCACGGGAGCAGCAGGGGTTCAAGGCCCGCCTGGCCATTGAGGAACGGGAGCGCCAGCGGCGGGCCCTGGCGATCGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCaa < 2:620111/150‑1 (MQ=255) gCCAGGTTGCGCTTCCACGGCAGCAGCAGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAAc > 1:545278/1‑150 (MQ=255) cAGGTTGCGCTTCCACGGCAGCAGCAGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAActg < 1:431087/150‑1 (MQ=255) gTTGCGCTTCCACGGCAGCAGCAGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAActgc < 2:795377/148‑1 (MQ=255) gTTGCGCTTCCACGGCAGCAGCAGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAActgc > 1:795377/1‑148 (MQ=255) gcgcTTCCACGGCAGCAGCAGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTg > 2:1286854/1‑150 (MQ=255) tCCACGGCAGCAGCAGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGga < 1:373962/150‑1 (MQ=255) ccACGGCAGCAGCAGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGgat < 2:1192954/150‑1 (MQ=255) ccACGGCAGCAGCAGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGCCCTGGCCCTGct > 2:701478/1‑133 (MQ=255) ccACGGCAGCAGCAGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGCCCTGGCCCTGct < 1:701478/134‑2 (MQ=255) aCGGCAGCAGCAGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGgatga > 2:64563/1‑150 (MQ=255) gcagcagcaGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCTTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATcc < 1:52346/150‑1 (MQ=255) agcagcagGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATcccc < 2:161789/150‑1 (MQ=255) cagcagGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGa > 2:14400/1‑150 (MQ=255) cagcagGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGa < 1:64563/150‑1 (MQ=255) agGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCa > 2:27902/1‑150 (MQ=255) ggCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCAt > 1:1229073/1‑150 (MQ=255) ggCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCg < 1:1016369/150‑1 (MQ=255) gCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGCCCTGGCCCTGctc < 2:410298/111‑3 (MQ=255) gCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGCCCTGGCCCTGctc > 1:410298/1‑109 (MQ=255) ccTCGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAg < 1:1286854/150‑1 (MQ=255) cATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCg < 1:113300/131‑1 (MQ=255) cATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCg > 2:113300/1‑131 (MQ=255) aGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCgtg < 2:1229073/150‑1 (MQ=255) gTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAac < 1:62370/150‑1 (MQ=255) gCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCa < 1:27902/150‑1 (MQ=255) cAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATc > 1:2249/1‑150 (MQ=255) aGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCt < 1:1127604/150‑1 (MQ=255) gTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACt > 2:356190/1‑150 (MQ=255) cTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCAt < 1:9995/98‑1 (MQ=255) cTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCAt > 2:9995/1‑98 (MQ=255) cTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGcc > 2:911910/1‑150 (MQ=255) tGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGcagggccagggc > 2:434540/1‑62 (MQ=255) tGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGcagggccagggc < 1:434540/62‑1 (MQ=255) ttGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAg < 1:533410/150‑1 (MQ=255) aCCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCACAAgggg > 2:22382/1‑150 (MQ=255) ccAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAggggg > 1:1194419/1‑150 (MQ=255) cAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGc < 1:911910/150‑1 (MQ=255) cAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGc < 1:1063894/150‑1 (MQ=255) cTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCa > 1:527822/1‑150 (MQ=255) ttCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCcgc < 1:408981/128‑1 (MQ=255) ttCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCcgc > 2:408981/1‑128 (MQ=255) gCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAaca < 1:1164390/87‑1 (MQ=255) gCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAaca > 2:1164390/1‑87 (MQ=255) ccAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAAc > 1:317264/1‑142 (MQ=255) ccAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAAc < 2:317264/142‑1 (MQ=255) tGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAAc > 2:1229672/1‑150 (MQ=255) gTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACt > 1:365655/1‑150 (MQ=255) ttCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTg > 1:946640/1‑150 (MQ=255) ccagggccTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGACCGCATCCGGCAACTGGCGAGCGGCCa > 1:961/1‑150 (MQ=255) ccagggccTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAATGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGcc < 2:1017232/124‑1 (MQ=255) ccagggccTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAATGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGcc > 1:1017232/1‑124 (MQ=255) | GATCTGGGCCAGGTTGCGCTTCCACGGCAGCAGCAGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGAGCGGCCA > NC_002947/3462931‑3463223 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |