Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,957,995 | G→A | 6.9% | P812S (CCG→TCG) | mnxG ← | manganese‑oxidizing multicopper oxidase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,957,995 | 0 | G | A | 6.9% | 165.0 / 2.8 | 58 | P812S (CCG→TCG) | mnxG | manganese‑oxidizing multicopper oxidase |
Reads supporting (aligned to +/- strand): ref base G (28/26); new base A (2/2); total (30/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.12e-01 |
GCGGTCGGCAGTGAAGGCCGAGGCGCCACGGAAGTTCACGCCCGTCAGGCTCTCTCCACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATCGGTGCCCTCTTCCGGCAGGTAGATGGGCTTGGCCTT > NC_002947/3957849‑3958142 | gCGGTCGGCAGTGAAGGCCGAGGCGCCACGGAAGTTCACGCCCGTCAGGCTCTCTCCACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCaa < 1:1237311/150‑1 (MQ=255) gCGGTCGGCAGTGAAGGCCGAGGCGCCACGGAAGTTCACGCCCGTCAGGCTCTCTCCACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCaa > 1:149327/1‑150 (MQ=255) tCGGCAGTGAAGGCCGAGGCGCCACGGAAGTTCACGCCCGTCAGGCTCTCTCCACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGgcg > 2:876217/1‑150 (MQ=255) tCGGCAGTGAAGGCCGAGGCGCCACGGAAGTTCACGCCCGTCAGGCTCTCTCCACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGgcg > 2:875952/1‑150 (MQ=255) tGAAGGCCGAGGCGCCACGGAAGTTCACGCCCGTCAGGCTCTCTCCACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTgg > 2:917139/1‑150 (MQ=255) tGAAGGCCGAGGCGCCACGGAAGTTCACGCCCGTCAGGCTCTCTCCACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTgg > 2:480258/1‑150 (MQ=255) aaGGCCGAGGCGCCACGGAAGTTCACGCCCGTCAGGCTCTCTCCACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTg < 2:251130/150‑1 (MQ=255) ggCCGAGGCGCCACGGAAGTTCACGCCCGTCAGGCTCTCTCCACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCg > 2:884454/1‑150 (MQ=255) gcgcCACGGAAGTTCACGCCCGTCAGGCTCTCTCCACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAAcgcg > 2:318899/1‑150 (MQ=255) ccgcccgccAGACTCTCTCCTCTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCCCGCTCATCCATGCAGGGCTCGTAGACCGGCACCATCGAAGGCGGCAAGGCGCCGTGGGTGCTGAACGCGCTGGCCActggctgg < 1:292338/149‑1 (MQ=255) aCGCCCGTCAGGCTCTCTCCACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCActggctgg < 1:318899/150‑1 (MQ=255) cGCCCGTCAGGCTCTCTCCACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACtggctggc > 1:1236970/1‑150 (MQ=255) ctctctCCACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGt < 1:722228/113‑1 (MQ=255) ctctctCCACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGt > 2:722228/1‑113 (MQ=255) cACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCAt > 1:1001730/1‑150 (MQ=255) cACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGACAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCAt > 2:899590/1‑150 (MQ=255) cACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGACAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCAt > 2:899700/1‑150 (MQ=255) tGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGc > 2:220156/1‑150 (MQ=255) gAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTggg < 2:1001730/150‑1 (MQ=255) aaCTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTg < 1:571573/147‑1 (MQ=255) aaCTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTg > 2:571573/1‑147 (MQ=255) aaCTCCCCAACCCCGGAAGACTGGGTAAGGCGTTTTCCACGGTCATCCATACAGGGCTCGTAGTACGGCGCACCCGCAGTCGGCAAGGCGTCGTTGGTGCGGAACGCGCTGGCCGCTGGCTGGGTTCGGGGGGTCAATGAATAGCGgggg > 2:610772/1‑150 (MQ=255) aCTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGgt < 1:220156/150‑1 (MQ=255) aCTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGACAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGgt < 1:899590/150‑1 (MQ=255) aCTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGACAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGgt < 1:899700/150‑1 (MQ=255) tCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGgtgt < 1:917139/150‑1 (MQ=255) cccAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTc < 2:929569/150‑1 (MQ=255) aCCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGt < 2:380406/85‑1 (MQ=255) aCCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGt > 1:380406/1‑85 (MQ=255) ccGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCTTGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATg < 2:580088/150‑1 (MQ=255) ccGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATg > 2:1033584/1‑150 (MQ=255) aCTGGGTCAGGCGTTTTCCAAGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGa > 1:996202/1‑150 (MQ=255) tGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTTGAAc > 2:620639/1‑150 (MQ=255) tGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAAc < 1:1033584/150‑1 (MQ=255) ggCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGc > 2:1206742/1‑146 (MQ=255) ggCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGc < 1:1206742/146‑1 (MQ=255) ccACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGctgcctgc < 2:489031/150‑1 (MQ=255) aCGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTc < 1:480258/150‑1 (MQ=255) gTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTTGAACTGCATGGCTGCCTGCTCGAc < 1:620639/150‑1 (MQ=255) aTCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATc > 2:907729/1‑150 (MQ=255) tCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGTTATTGCATGGCTGCCTGCTCGACATCg > 1:295/1‑150 (MQ=255) ccATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATCgg > 2:971016/1‑150 (MQ=255) cATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATCGGt > 2:142424/1‑150 (MQ=255) tGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATCGGTGc < 2:996202/150‑1 (MQ=255) cTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATCGGTGCCCTCTTc < 1:875952/150‑1 (MQ=255) cTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATCGGTGCCCTCTTc < 1:876217/150‑1 (MQ=255) cTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATCGGTGCCCTCTTc < 1:907729/150‑1 (MQ=255) tCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATCGGTGCCCTCTTcc < 1:884454/150‑1 (MQ=255) gTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGctgcc > 1:364621/1‑124 (MQ=255) gTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGctgcc < 2:364621/124‑1 (MQ=255) gTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATCGGTGCCCTCTTCCgg < 2:721913/150‑1 (MQ=255) gTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATCGGTGCCCTCTTCCgg > 1:1085469/1‑150 (MQ=255) gTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCAACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATCGGTGCCCTCTTCCgg > 1:869482/1‑150 (MQ=255) tAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATCGGTGCCCTCTTCCGGc < 1:142424/150‑1 (MQ=255) aGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATCGGTGCCCTCTTCCggga > 1:150240/1‑148 (MQ=255) gcgcACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATCGGTGCCCTCTTCCGGCAGGTAGa > 2:78470/1‑150 (MQ=255) gCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATCGGTGCCCTCTTCCGGCAGGTAGATGGGCTTg > 2:751294/1‑150 (MQ=255) cGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATCGGTGCCCTCTTCCGGCAGGTAGATGGGCTTGGCCtt < 1:78470/150‑1 (MQ=255) | GCGGTCGGCAGTGAAGGCCGAGGCGCCACGGAAGTTCACGCCCGTCAGGCTCTCTCCACTGTTGAACTCCCCAACCCCGGAAGACTGGGTCAGGCGTTTTCCACGGTCATCCATGCAGGGCTCGTAGAACGGCGCACCCGCAGTCGGCAAGGCGCCGTTGGTGCGGAACGCGCTGGCCACTGGCTGGCTGCCGGGGATCAATGCATAGCTGGGGTGTTCACCCATGGCGTGGAACTGCATGGCTGCCTGCTCGACATCGGTGCCCTCTTCCGGCAGGTAGATGGGCTTGGCCTT > NC_002947/3957849‑3958142 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |