Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,160,706 | G→C | 7.8% | intergenic (+28/+93) | PP_3662 → / ← PP_3663 | hypothetical protein/GGDEF domain‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,160,706 | 0 | G | C | 7.8% | 140.1 / 2.3 | 51 | intergenic (+28/+93) | PP_3662/PP_3663 | hypothetical protein/GGDEF domain‑containing protein |
Reads supporting (aligned to +/- strand): ref base G (22/22); new base C (2/2); total (25/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCC > NC_002947/4160560‑4160853 | aCGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATg > 1:985855/1‑150 (MQ=255) gTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGccc < 1:1095045/150‑1 (MQ=255) gTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGccc < 2:1116558/150‑1 (MQ=255) tGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGacggcga < 2:561068/150‑7 (MQ=255) gcgcCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATCCATGCCCGTcctc < 1:648522/150‑4 (MQ=255) gcCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAAcg > 1:1252430/1‑150 (MQ=255) cGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGAATGCCCGTCGAAcgcg > 1:411005/1‑150 (MQ=255) gACCCGCTAAGCCGGCTGCTGCAGGCATTCGTCGACGAGCACTGGATGAAGCTGCCCTGCGGCTCGGCTTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCg > 2:531875/1‑150 (MQ=255) ccGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGt < 2:907300/150‑1 (MQ=255) ccGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAg > 1:964747/1‑150 (MQ=255) ccGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAg > 2:370609/1‑150 (MQ=255) gcAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTAc < 1:673123/150‑1 (MQ=255) cAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACg > 2:293258/1‑150 (MQ=255) aGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACgg > 1:98403/1‑150 (MQ=255) cgACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGAATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCcaca < 2:411005/150‑1 (MQ=255) gACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACAt < 2:964747/150‑1 (MQ=255) aCCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACTGGCATCCATGCCCGTc < 2:826493/102‑1 (MQ=255) aCCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATCCATGCCCGTc > 1:826493/1‑102 (MQ=255) aCCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTCATCTACTCCCGACGGGAATTTAGTCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATg < 1:1120944/150‑1 (MQ=255) aGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCgg > 1:433861/1‑114 (MQ=255) aGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCgg < 2:433861/114‑1 (MQ=255) cGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCcaca < 1:78209/140‑1 (MQ=255) cGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCcaca > 2:78209/1‑140 (MQ=255) gCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTc > 2:1075629/1‑150 (MQ=255) gCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTc > 2:130991/1‑150 (MQ=255) cggcggCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCAc < 1:293258/150‑1 (MQ=255) accctgcgcggcgTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACACACATGGGTTACATGAAAGCTCCCCCAc > 1:44277/6‑150 (MQ=255) ggcggcGCGGCGTATGTACCGTGCTATCAGGTGGCAACCCGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCAcc < 1:8355/150‑1 (MQ=255) gcggcgcggcGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGAc < 1:111818/98‑1 (MQ=255) gcggcgcggcGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGAc > 2:111818/1‑98 (MQ=255) gcgcggcgTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAgg < 2:985855/150‑1 (MQ=255) ggcgTATGTACCGTGCTATCAGGTGGCGACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGAc < 2:91413/150‑1 (MQ=255) tCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACt > 1:3827/1‑141 (MQ=255) tCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACt < 2:3827/141‑1 (MQ=255) aGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCa > 2:367162/1‑150 (MQ=255) ggTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCaa < 1:367162/150‑1 (MQ=255) tGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAacc < 1:370609/150‑1 (MQ=255) tGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAacc < 2:733161/150‑1 (MQ=255) cAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAaccacc < 1:531875/150‑1 (MQ=255) aaCCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGaaa > 2:1230116/1‑104 (MQ=255) aaCCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGaaa < 1:1230116/104‑1 (MQ=255) aCCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCAccgc > 1:1123080/1‑150 (MQ=255) gctgctTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGaa > 1:234073/1‑150 (MQ=255) gctTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGaaaaa > 2:80424/1‑150 (MQ=255) aCTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACa > 1:216895/1‑81 (MQ=255) aCTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACa < 2:216895/81‑1 (MQ=255) tGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCca < 1:117265/68‑1 (MQ=255) tGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCca > 2:117265/1‑68 (MQ=255) gACGGGCATCCATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGt > 2:1266941/1‑150 (MQ=255) aTGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGccc > 1:204826/1‑150 (MQ=255) tGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTCGCTGCCGCTCTCACTGCAGGCGTTGAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGcccc < 2:44277/150‑1 (MQ=255) | ACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCC > NC_002947/4160560‑4160853 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |