| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 36,174 | A→C | 7.6% | intergenic (+59/+24) | PP_0032 → / ← PP_0033 | hypothetical protein/undecaprenyl‑glycosyl transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 36,174 | 0 | A | C | 7.6% | 129.6 / 4.8 | 53 | intergenic (+59/+24) | PP_0032/PP_0033 | hypothetical protein/undecaprenyl‑glycosyl transferase |
| Reads supporting (aligned to +/- strand): ref base A (22/27); new base C (2/2); total (24/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.96e-01 | |||||||||||
GAGCGATGACTCTTCGGACCAGAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCGTTCGCTTCGGTGATCGATGT > NC_002947/36025‑36320 | gAGCGATGACTCTTCGGACCAGAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTaaaa > 1:1010990/1‑150 (MQ=255)gAGCGATGACTCTTCGGACCAGAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTaaaa > 1:1146393/1‑150 (MQ=255) gATGACTCTTCGGACCAGAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTg < 2:730052/150‑1 (MQ=255) ctTCGGACCAGAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGTTTTACCCTGGCttttt < 1:1216974/150‑1 (MQ=255) ctTCGGAACAGAATAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCttttt < 2:1055777/150‑1 (MQ=255) ttCGGACCAGAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCtttttt < 1:226276/150‑1 (MQ=255) cGGACCAGAACAAACAACAAGTCGCGCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTtgt < 2:519/150‑1 (MQ=255) ggaacAGAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTtgtg < 2:1055149/146‑1 (MQ=255) gAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCtttttt < 2:405383/141‑1 (MQ=255) gAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCtttttt > 1:405383/1‑141 (MQ=255) aacaaacaACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGaa > 2:120905/1‑150 (MQ=255) caaacaaCAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAAtt > 2:673240/1‑150 (MQ=255) caaacaaCAAGCCGCTCAAGAGCAAAAGAAAGAAAGCAAGGAGGGTACGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAAtt < 1:496081/150‑1 (MQ=255) aacaacAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGTTTTACCCTGGCtttt < 1:198879/134‑1 (MQ=255) aacaacAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGTTTTACCCTGGCtttt > 2:198879/1‑134 (MQ=255) aacaacAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTa < 2:1010990/150‑1 (MQ=255) acaacaAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAg > 2:1112205/1‑150 (MQ=255) caacaaGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGc > 1:994604/1‑150 (MQ=255) agagCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGa < 2:1146393/150‑1 (MQ=255) gaaagaaagCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTcc < 1:1112205/150‑1 (MQ=255) aaagCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCAtt < 1:277661/150‑1 (MQ=255) aaGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCttt > 1:521169/1‑150 (MQ=255) aaGAATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCCGCAAAAAAGCAAGGGTAAAACCTGGGTTTTTTGTGCTTAGAATTTAGCCTTCGGTCTTGCGAGGCGTTTCCGCATTGCttt > 2:40119/1‑150 (MQ=255) gATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTtctc < 1:1263657/150‑1 (MQ=255) gAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGAc > 2:828078/1‑150 (MQ=255) gAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGAc > 1:1233585/1‑150 (MQ=255) gCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCgg < 2:1175467/150‑1 (MQ=255) ccGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGc < 1:138964/115‑1 (MQ=255) ccGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGc > 2:138964/1‑115 (MQ=255) ccGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTtc < 1:232189/132‑1 (MQ=255) ccGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTtc > 2:232189/1‑132 (MQ=255) tAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTtgtg < 2:994604/150‑1 (MQ=255) cggcggTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCggg < 1:120905/150‑1 (MQ=255) ccgcggTTAAATAGGACTTCAAATGACGAAAGAAAGAGACAAAAAAGCCAGGGTGAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCggg < 2:864507/148‑1 (MQ=255) ggcggTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCgggg < 2:1265135/150‑1 (MQ=255) gcggTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGc < 2:521169/150‑1 (MQ=255) aaTAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCa > 2:1154339/1‑150 (MQ=255) aaTAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCa > 2:70983/1‑150 (MQ=255) tAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAAt < 2:1233585/150‑1 (MQ=255) gACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGc > 1:440473/1‑150 (MQ=255) gACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGACACGCCCTCGGCACCTTGTGCGGGGCGTTTCTAATGGc > 1:67269/1‑150 (MQ=255) cTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGaac > 1:135625/1‑150 (MQ=255) ttCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGcaca > 1:969369/1‑150 (MQ=255) gaaagaaaTCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAgctg > 1:6936/1‑150 (MQ=255) aaagaaaTCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGCCACAGCAGGAgctgg > 2:119453/1‑150 (MQ=255) gaaaTCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAgctggctg < 2:440473/150‑1 (MQ=255) gaaaTCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAgctggctg > 2:442496/1‑150 (MQ=255) tCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCGt < 1:442496/150‑1 (MQ=255) tCGACAAAAAACCCACGGTAAAACCTGGCGTTTTTGTGCTTGGAATTTAGCCTTCGCTCTTGCCAGGCCGCTCCGCACTTCCTTCTCCCGCCATACCCTCGGCACCTTGTGCGGGCCGTTTCCAATGGCACAGCACGAGCTGGCTGGAGt > 2:1200547/1‑150 (MQ=255) cGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCGtt < 1:828078/150‑1 (MQ=255) gACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCGTTc > 1:216826/1‑150 (MQ=255) aCAAAAAAGCCAGGTTTTACCCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCGTTCg > 1:1242354/1‑150 (MQ=255) aaaaGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCGTTCGCTTc < 1:7154/150‑1 (MQ=255) aGCCAGGGTAAAACCTGGCTTTTTTGTGGTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGGCCCTCGGCACCTTGTGCGGGGCGTTTCCAAGGGCACAGCAGGAGCTGGCTGGCGTTCGCTTCGGt < 1:451317/150‑1 (MQ=255) ttAAAACCTCGCTTTTTTGTTCTTGGATTTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGAACCTCGGCACCTTGTGCGGCGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCGTTTGCTTCGGTGATCTAt < 1:40119/149‑1 (MQ=255) aaaaCCTGATTTGTTGGTGCTGGGAATTTAGCCTTCGTTCTTGAGAGTCATTTCCGCATTGCTGTCTCCGGCCCGTCGACCGGCACCTTGTGCGGGGCGTTTCCAAGGGCACAGCAGGAGCTGGCTGGCGTTCGCTTCGGTGATCGAtgt < 1:927403/150‑1 (MQ=255) | GAGCGATGACTCTTCGGACCAGAACAAACAACAAGTCGCTCAAGAGCAAAAGAAAGAAAGCAAGGATGGTAAGGAACAAGCCGACAATTAATCGGCGGTTAAATAGGACTTCAAATGACGAAAGAAATCGACAAAAAAGCCAGGGTAAAACCTGGCTTTTTTGTGCTTGGAATTTAGCCTTCGTTCTTGCGAGGCGTTTCCGCATTGCTTTCTCCGGCCAGACCCTCGGCACCTTGTGCGGGGCGTTTCCAATGGCACAGCAGGAGCTGGCTGGCGTTCGCTTCGGTGATCGATGT > NC_002947/36025‑36320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |