Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,669,408 | A→G | 7.4% | I412V (ATC→GTC) | nuoM → | NADH‑quinone oxidoreductase subunit M |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,669,408 | 0 | A | G | 7.4% | 154.4 / 2.5 | 54 | I412V (ATC→GTC) | nuoM | NADH‑quinone oxidoreductase subunit M |
Reads supporting (aligned to +/- strand): ref base A (25/25); new base G (2/2); total (27/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.06e-01 |
GCCAGCTGTACGAGCGCCTGCACACCCGTGACATGCGTCAGATGGGTGGCCTGTGGCACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGTGCCTACTTCGGCCCGGCCAAGACCGACACCGTGCTGGCCGGCATGGAC > NC_002947/4669259‑4669554 | gCCAGCTGTACGAGCGCCTGCACACCCGTGACATGCGTCAGATGGGTGGCCTGTGGCACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTtcctga < 2:1253155/150‑1 (MQ=255) gCCAGCTGTACGAGCGCCTGCACACCCGTGACATGCGTCAGATGGGTGGAATGTGGCACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTtcctga < 1:79310/150‑1 (MQ=255) gcgcCTGCACACCCGTGACATGCGTCAGATGGGTGGCCTGTGGCACCGCATCGCCTACCTGCCGGCCATCAGCCCGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGACCGGCAg < 1:243375/150‑1 (MQ=255) cTGCACACCCGTGACATGCGTCAGATGGGTGGCCTGTGGCACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTc > 1:546765/1‑150 (MQ=255) gCACACCCGTGACATGCGTCAGATGGGTGGCCTGTGGCACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGt < 1:1183959/150‑1 (MQ=255) cacCCGTGACATGCGTCAGATGGGTGGCCTGTGGCACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCa < 2:1091702/150‑1 (MQ=255) cacCCGTGACATGCGTCAGATGGGTGGCCTGTGGCACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCa > 2:778825/1‑150 (MQ=255) ccGTGACATGCGTCAGATGGGTGGCCTGTGGCACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGt > 2:1001211/1‑150 (MQ=255) gTGACATGCGTCAGATGGGTGGCCTGTGGCACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTAc < 2:514034/150‑1 (MQ=255) aTGCGTCAGATGGGTGGCCTGTGGCACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTgg < 2:1182340/150‑1 (MQ=255) aTGCGTCAGATGGGTGGCCTGTGGCACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTgg > 2:434439/1‑150 (MQ=255) tGCGTCAGATGGGTGGCCTGTGGCACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGa > 2:437121/1‑150 (MQ=255) tGGCCTGTGGCACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGc < 2:700372/150‑1 (MQ=255) cTGTGGCACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACt > 2:598041/1‑150 (MQ=255) tgGCACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTAcc > 2:1209028/1‑150 (MQ=255) ggCACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCg < 2:546765/150‑1 (MQ=255) cACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGc > 1:826179/1‑150 (MQ=255) aCCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGGTCCTGATCGGCAGCTTCGTGCATGTACCGt > 1:582657/1‑123 (MQ=255) aCCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGGTCCTGATCGGCAGCTTCGTGCATGTACCGt > 1:582892/1‑123 (MQ=255) aCCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGGTCCTGATCGGCAGCTTCGTGCATGTACCGt < 2:582657/123‑1 (MQ=255) aCCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGGTCCTGATCGGCAGCTTCGTGCATGTACCGt < 2:582892/123‑1 (MQ=255) ccGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCt < 1:637741/150‑1 (MQ=255) cGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCATg < 2:1038920/150‑1 (MQ=255) cATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGTATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGgt < 2:1105170/150‑1 (MQ=255) gCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTc < 2:826179/150‑1 (MQ=255) tGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTg > 2:410397/1‑150 (MQ=255) tGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTg < 1:900848/150‑1 (MQ=255) ggCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGATGAGCATGCCAGGCACTGGCAACTTCGTCGGCGAGTTCATGACCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTg < 1:927164/149‑1 (MQ=255) ccGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGc < 2:1044841/122‑1 (MQ=255) ccGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGc > 1:1044841/1‑122 (MQ=255) gCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTg < 1:1104833/104‑1 (MQ=255) gCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTg > 2:1104833/1‑104 (MQ=255) cATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATc > 1:1236105/1‑115 (MQ=255) cATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATc < 2:1236105/115‑1 (MQ=255) aTCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCg > 1:903746/1‑150 (MQ=255) tCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGc < 1:968946/150‑1 (MQ=255) gCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGa > 1:571547/1‑150 (MQ=255) gCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCAt < 2:607531/78‑1 (MQ=255) gCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCAt > 1:607531/1‑78 (MQ=255) gCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGa > 1:1073439/1‑145 (MQ=255) gCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGa < 2:1073439/145‑1 (MQ=255) gCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCAc > 1:676721/1‑150 (MQ=255) gCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGt > 2:496055/1‑150 (MQ=255) gCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGTGcc < 2:903746/150‑1 (MQ=255) aTCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGTGCCTa > 1:260026/1‑150 (MQ=255) aTCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGTGCCTa < 1:598041/150‑1 (MQ=255) ccTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGTGCCTa < 1:132802/141‑1 (MQ=255) ccTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGTGCCTa > 2:132802/1‑141 (MQ=255) ccTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGTGCCTACTTcggccc < 1:778825/150‑1 (MQ=255) aGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGTGCCTACTTCGGCCCGGCCaa > 1:1136893/1‑150 (MQ=255) gCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGTGCCTACTTCGGCCCGGCCAAGACCGaca < 1:434439/150‑1 (MQ=255) aCTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGTGCCTACTTCGGCCCGGCCTAGACCGACACCg > 2:1144203/1‑150 (MQ=255) ttCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGgt < 2:246017/80‑1 (MQ=255) ttCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGgt > 1:246017/1‑80 (MQ=255) ttCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGTGCCTACTTCGGCCCGGCCAAGACCGACACCGTg > 1:544006/1‑150 (MQ=255) gtcgGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCGTGTACTGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGTGCCTACTTCGGCCCGGCCAAGACCGACACCGTGCTg > 1:1039158/1‑150 (MQ=255) cctgatcctgatCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGTGCCTACTTCGGCCCGGCCAAGACCGACACCGTGCTGGCCGGCATGGa > 1:545540/1‑150 (MQ=255) cctgatcctgatCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCAGTTCTGTTTACTCGCTGATCATGATCCACCGTGCCTACTTCGGCCCGGCCAAGACCGACACCGTGCTGGCCGGCATGGa < 1:437121/150‑1 (MQ=255) ctgatcctgatcGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGTGcc > 1:1055348/1‑105 (MQ=255) ctgatcctgatcGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGTGcc < 2:1055348/105‑1 (MQ=255) ctgatcctgatcGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGTGCCTACTTCGGCCCGGCCAAGACCGACACCGTGCTGGCCGGCATGGAc > 2:855729/1‑150 (MQ=255) | GCCAGCTGTACGAGCGCCTGCACACCCGTGACATGCGTCAGATGGGTGGCCTGTGGCACCGCATCGCCTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGATCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATCGCCACTACCGGCCTGGTGTTCGGTTCTGTTTACTCGCTGATCATGATCCACCGTGCCTACTTCGGCCCGGCCAAGACCGACACCGTGCTGGCCGGCATGGAC > NC_002947/4669259‑4669554 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |