Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,827,100 | T→G | 11.5% | S1379R (AGT→CGT) ‡ | pvdL ← | non‑ribosomal peptide synthetase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,827,100 | 0 | T | G | 11.5% | 123.2 / 8.9 | 52 | S1379R (AGT→CGT) ‡ | pvdL | non‑ribosomal peptide synthetase |
Reads supporting (aligned to +/- strand): ref base T (19/27); new base G (2/4); total (21/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.23e-01 |
TGCCAGTGGGTGACGTTGATGGCGGTTTCAGTCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCGGTG > NC_002947/4826952‑4827242 | tGCCAGTGGGTGACGTTGATGGCGGTTTCAGTCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACtt < 2:1263279/150‑1 (MQ=255) gCCAGTGGGTGACGTTGATGGCGGTTTCAGTCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTg > 1:135487/1‑150 (MQ=255) gTGACGTTGATGGCGGTTTCAGTCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGc < 1:207273/150‑1 (MQ=255) tGACGTTGATGGCGGTTTCAGTCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCAAGTGCCTGcagta < 1:1135786/150‑5 (MQ=255) tGACGTTGATGGCGGTTTCAGTCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCAAGTGCCTGcagta < 1:693172/150‑5 (MQ=255) gACGTTGATGGCGGTTTCAGTCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCAAGTGCCTGcagtag < 1:1203896/150‑6 (MQ=255) gTTGATGGCGGTTTCAGTCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGc < 1:992799/142‑1 (MQ=255) gTTGATGGCGGTTTCAGTCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGc > 2:992799/1‑142 (MQ=255) ttGATGGCGGTTTCAGTCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCCCCTgg > 2:116032/1‑150 (MQ=255) ggCGGTTTCAGTCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGaa < 2:97019/150‑1 (MQ=255) ggTTTCAGTCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAacac < 1:1173281/150‑1 (MQ=255) tttCAGTCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCt > 2:819707/1‑150 (MQ=255) ttCAGTCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTg < 1:116032/150‑1 (MQ=255) tCAGTCGCGCCATACCGGTGGTGCAGTTGCACCTGCGGCAGCACCGGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGc < 2:1096283/150‑1 (MQ=255) aGTCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCaa < 1:485815/150‑1 (MQ=255) tCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACa > 1:979466/1‑150 (MQ=255) tCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACa < 1:819707/150‑1 (MQ=255) gggCCATACCGGTTGTGCAGTTGCACCTGCCGCATCACGTGCAGCACGCGGTCACGCAGCGAGTCAAACAGCGTTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAgc < 1:22928/150‑1 (MQ=255) ccATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCAGGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAgcggc > 1:1196878/1‑150 (MQ=255) gctgtgCAGTTGCACCTGCGGCCGCACCTGCAGCACGTGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACaaa < 1:72353/148‑1 (MQ=255) aGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGc < 2:979466/150‑1 (MQ=255) aCCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGc < 1:484120/141‑1 (MQ=255) aCCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGc > 2:484120/1‑141 (MQ=255) cTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCAc < 2:1020077/150‑1 (MQ=255) gCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCAccc < 1:766375/150‑1 (MQ=255) agcaCCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATaa > 2:200407/1‑150 (MQ=255) cTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAac > 2:1141243/1‑100 (MQ=255) cTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAac < 1:1141243/100‑1 (MQ=255) cTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTg < 2:1196878/150‑1 (MQ=255) caCGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAg < 1:781937/150‑1 (MQ=255) aCGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAgg < 2:959723/150‑1 (MQ=255) cgGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCa < 1:200407/150‑1 (MQ=255) tCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCg > 2:157654/1‑150 (MQ=255) gCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCt < 1:280554/79‑1 (MQ=255) gCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCt > 2:280554/1‑79 (MQ=255) aCGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGAt < 1:157654/150‑1 (MQ=255) gCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCAcc > 1:945622/1‑150 (MQ=255) aCCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCgg > 2:849923/1‑132 (MQ=255) aCCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCgg < 1:849923/132‑1 (MQ=255) aCCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAgg > 1:951891/1‑150 (MQ=255) ccGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCa < 1:956133/84‑1 (MQ=255) ccGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCa > 2:956133/1‑84 (MQ=255) aaCACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCg > 1:26686/1‑150 (MQ=255) gcgcAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAg > 1:583570/1‑150 (MQ=255) cAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCtt < 2:26686/150‑1 (MQ=255) ccgttatGCCGGCAGTTTCATGCGCCTCCTTGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGc < 2:915601/144‑1 (MQ=255) gagccgCAGGCAAGTGCCTGCAGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAg > 1:180611/6‑150 (MQ=255) ccgCAGGCAAGTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGa > 2:193269/3‑114 (MQ=255) ccgCAGGCAAGTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGa < 1:193269/112‑1 (MQ=255) gCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCGGt < 2:135487/150‑1 (MQ=255) cAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAgg < 1:996598/122‑1 (MQ=255) cAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAgg > 2:996598/1‑122 (MQ=255) cAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCaagatcgg > 1:915601/1‑143 (MQ=255) | TGCCAGTGGGTGACGTTGATGGCGGTTTCAGTCGGGCCATACCGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTGGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCGGTG > NC_002947/4826952‑4827242 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |