Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,830,110 | C→T | 6.9% | P375P (CCG→CCA) | pvdL ← | non‑ribosomal peptide synthetase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,830,110 | 0 | C | T | 6.9% | 170.5 / 2.6 | 59 | P375P (CCG→CCA) | pvdL | non‑ribosomal peptide synthetase |
Reads supporting (aligned to +/- strand): ref base C (27/27); new base T (2/2); total (29/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.12e-01 |
TTTCGACGAAGGTTCGAGCGCTGGCTTCTGGGTTGCGCCAGTAGCCCCGGGCGATGCTCGGGCCGCCTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGCCACGACGGCTGCCGCTAACGAACAGGGTGGCTTCGGCCAGGCCATA > NC_002947/4829962‑4830253 | tttCGACGAAGGTTCGAGCGCTGGCTTCTGGGTTGCGCCAGTAGCCCCGGGCGATGCTCGGGCCGCCTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCg > 1:910304/1‑150 (MQ=255) ttCGACGAAGGTTCGAGCGCTGGCTTCTGGGTTGCGCCAGTAGCCCCGGGCGATGCTCGGGCCGCCTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCgg < 2:1280217/150‑1 (MQ=255) acgaAGGTTCGAGCGCTGGCTTCTGGGTTGCGCCAGTAGCCCCGGGCGATGCTCGGGCCGCCTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAg < 2:152099/150‑1 (MQ=255) ggTTCGAGCGCTGGCTTCTGGGTTGCGCCAGTAGCCCCGGGCGATGCTCGGGCCGCCTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCa > 1:608063/1‑150 (MQ=255) aGCGCTGGCTTCTGGGTTGCGCCAGTAGCCCCGGGCGATGCTCGGGCCGCCTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACtcat < 2:608063/150‑1 (MQ=255) cgcTGGCTTCTGGGTTGCGCCAGTAGCCCCGGGCGATGCTCGGGCCGCCTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACtcatca > 1:640672/1‑150 (MQ=255) ttCTGGGTTGCGCCAGTAGCCCCGGGCGATGCTCGGGCCGCCTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCt < 1:771206/150‑1 (MQ=255) gTTGCGCCAGTAGCCCCGGGCGATGCTCGGGCCGCCTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGt < 1:69990/150‑1 (MQ=255) gcCAGTAGCCCCGGGCGATGCTCGGGCCGCCTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCgg < 1:595545/150‑1 (MQ=255) gATGCTCGGTCCGCCTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTggc < 1:406115/150‑1 (MQ=255) gATGCTCGGGCCGCCTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTggc < 2:614211/150‑1 (MQ=255) gCTCGGGCCGCCTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACtcatc > 1:202476/1‑112 (MQ=255) gCTCGGGCCGCCTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACtcatc < 2:202476/112‑1 (MQ=255) cGGGCCGCCTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGaa < 2:640672/150‑1 (MQ=255) ggCCGCCTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAgg > 1:386636/1‑150 (MQ=255) cTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTgg < 1:476740/150‑1 (MQ=255) ccAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGc > 2:1025984/1‑107 (MQ=255) ccAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGc < 1:1025984/107‑1 (MQ=255) ccAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATc > 1:289743/1‑150 (MQ=255) aGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCttt > 1:393567/1‑142 (MQ=255) aGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCttt < 2:393567/142‑1 (MQ=255) tttCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCt > 2:414733/1‑150 (MQ=255) cccACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAgc < 2:386636/150‑1 (MQ=255) ccACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCTACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAgcg > 1:162939/1‑150 (MQ=255) ccTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTg < 1:628617/131‑1 (MQ=255) ccTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTg > 2:628617/1‑131 (MQ=255) ccTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCgcgg < 2:459348/150‑1 (MQ=255) ccTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCgcgg < 2:289743/150‑1 (MQ=255) tCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATAccc < 2:910304/150‑1 (MQ=255) gaacccAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGTGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTc > 2:575489/4‑98 (MQ=255) gaacccAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGTGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTc > 2:575534/4‑98 (MQ=255) gaacccAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGTGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTc < 1:575534/95‑1 (MQ=255) gaacccAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGTGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTc < 1:575489/95‑1 (MQ=255) gCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTg > 1:719641/1‑121 (MQ=255) gCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTg < 2:719641/121‑1 (MQ=255) gCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTg < 2:1241743/150‑1 (MQ=255) ccAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCCGGATGCCGGTGCCGGGGTCGGCGCGGTTGGAGGAGCGGGCTTTGGCATGCAGCTCAATCGAGGCGATCCACTGGc > 1:925712/1‑150 (MQ=255) ccAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGc > 2:122296/1‑150 (MQ=255) ccAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGc > 2:972574/1‑150 (MQ=255) cACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCttt > 1:801070/1‑114 (MQ=255) cACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCttt < 2:801070/114‑1 (MQ=255) ttGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGCCacgacg > 2:1207430/1‑150 (MQ=255) ttGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGCCacgacg > 1:364810/1‑150 (MQ=255) tGCAACAGTTGGGGCTAGACGATGCTTATCACGGGCCCCGGCTGGGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGCCACGACgg < 2:1239423/150‑1 (MQ=255) cTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGc > 1:8695/1‑137 (MQ=255) cTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGc < 2:8695/137‑1 (MQ=255) gCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGCCACGACGGCTGCCGCTaa > 2:4098/1‑150 (MQ=255) tCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCgcgg > 1:746468/1‑115 (MQ=255) tCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCgcgg < 2:746468/115‑1 (MQ=255) gaTGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGCCACGACGGCTGCCGCTAACGAACAGGGt > 2:1188324/1‑150 (MQ=255) tACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGCCACGACGGCTGCCGCTAACGAACAGGGTGGCTTc < 1:4098/150‑1 (MQ=255) aCCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGCCACGACGGCTGCCGCTAACGAACAGGGTGGCTTCg > 1:636199/1‑150 (MQ=255) gcgTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGCCACGACGGCTGCCGCTAACGAACAGGGTGGCTTc > 2:691512/1‑146 (MQ=255) gcgTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGCCACGACGGCTGCCGCTAACGAACAGGGTGGCTTc < 1:691512/146‑1 (MQ=255) tGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGTCGCCAATTCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGCCACGACGGCTGCCGCTAACGAACAGGGTGGCTTCggccagg < 1:414733/150‑1 (MQ=255) tGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGCCACGACGGCTGCCGCTAACGAACAGGGTGGCTTCggccagg > 1:198726/1‑150 (MQ=255) cccGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGCCACGACGGCTGCCGCTAACGAACAGGGTGGCTTCggccaggcca > 1:180049/1‑150 (MQ=255) ccGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGCCACGACGGCTGCCGCTAACGAACAGGGTGGCTTCGGCCAGGCCAt > 1:841570/1‑150 (MQ=255) cGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGCCACGACGGCTGCCGCTAACGAACAGGGTGGCTTCGGCCAGGCCATa < 1:972574/150‑1 (MQ=255) | TTTCGACGAAGGTTCGAGCGCTGGCTTCTGGGTTGCGCCAGTAGCCCCGGGCGATGCTCGGGCCGCCTGCCCAGATTTCCCCCACCTGGTTGTCGCCCAGCACTTGCAACTGTTGCGGCTCGACGATGCGTACCGCGTGCCCCGGCTGCGGGAAGCCGCAACTCATCAGCACGCTGCCAGTGCCGGGTTCGGCGCGGTTGGCGGCGAAGGCTTTGGCATCCAGCTCAAGCGCGGCGATACCCTGGCCACGACGGCTGCCGCTAACGAACAGGGTGGCTTCGGCCAGGCCATA > NC_002947/4829962‑4830253 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |